- Max Planck Institute for Biological Cybernetics (Tübingen)
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- Max Planck Institute for Developmental Biology (Tübingen)
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- Max Planck Institute for Intelligent Systems (Stuttgart/Tübingen)
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- Friedrich Miescher Laboratory, Max Planck Society (Tübingen)
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- NMI – Natural and Medical Sciences Institute (Reutlingen)
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- Helmholtz Center for Environmental Research Leipzig-Halle
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- Helmholtz Association: German Center for Neurodegenerative Diseases (DZNE)
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- Helmholtz Association: German Center for Diabetes Research (DZD)
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- Helmholtz Association: German Center for Infection Research (DZI)
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- Helmholtz Association: German Consortium for Translational Cancer Research (DKTK)
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- IWM – KMRC Institut für Wissensmedien – Knowledge Media Research Center (Tübingen)
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- Dr. Margarete Fischer-Bosch Institute for Clinical Pharmacology (Stuttgart)
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- Fraunhofer Institute for Interfacial Engineering and Biotechnology (IGB, Stuttgart)
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- Werner Siemens Foundation
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- Heidelberg Academy of Sciences and Humanities
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- University of Stuttgart – cooperation within the inter-university center for medical technology, the IZST
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- Forschungszentrum Jülich, member of the Helmholtz Association
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- Institute for Applied Economic Research e. V. (Tübingen)
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- Senckenberg Research Institute (Frankfurt am Main)
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- Curt Engelhorn Center for Archaeometry (Mannheim) – associated with the University of Tübingen
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- Universität Hohenheim – Center for Nutritional Medicine (ZEM) Tübingen – Hohenheim
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- PH Ludwigsburg University of Education – Faculty of Special Education, Reutlingen – in association with the University of Tübingen (Reutlingen)
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- Forschungsinstitut für Arbeit, Technik und Kultur e. V. – group researching processes of social, cultural and technical change. (Tübingen)
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- Institut für donauschwäbische Geschichte und Landeskunde – researching the history of ethnic Germans in southeastern Europe (Tübingen)
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- Institut für Rehabilitationsforschung, Qualitätsentwicklung und Strukturanalyse in der Behindertenhilfe (REQUEST) e. V. – carries out analyses to develop methods of prevention, intervention and rehabilitation associated with disabilities (Tübingen)
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- University of Applied Forest Sciences – Rottenburg
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- Staatliches Seminar für Didaktik und Lehrerbildung (Gymnasien) Tübingen
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