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K-*ϳR03MuI,.RHIK(/,K)MͫJK-LK- grrPK+ZMNNPK s 5ىU0de/explosys/influenza/epidynet/LGAInfluSim.class.*de/explosys/influenza/epidynet/LGAInfluSimjavax/swing/JAppletframeLjavax/swing/JFrame; splashIconLjavax/swing/Icon;iconLjavax/swing/ImageIcon;class$0Ljava/lang/Class; Synthetic()VCodejavax/swing/ImageIcon *de.explosys.influenza.epidynet.LGAInfluSimjava/lang/ClassforName%(Ljava/lang/String;)Ljava/lang/Class;  java/lang/NoClassDefFoundErrorjava/lang/Throwable getMessage()Ljava/lang/String; !" #(Ljava/lang/String;)V %& 'InfluSim_Splash.jpg) getResource"(Ljava/lang/String;)Ljava/net/URL; +, -(Ljava/net/URL;)V %/ 0  2EpiDyNet_Icon.gif4 6 java/lang/ClassNotFoundException8LineNumberTableLocalVariableTable Exceptionsjava/awt/HeadlessException= % ? createFrame A Bthis,Lde/explosys/influenza/epidynet/LGAInfluSim;java/awt/ToolkitFgetDefaultToolkit()Ljava/awt/Toolkit; HI GJ getScreenSize()Ljava/awt/Dimension; LM GNjavax/swing/JWindowP Q?javax/swing/JLabelS(Ljavax/swing/Icon;)V %U TVjava/awt/ColorXgrayLjava/awt/Color; Z[ Y\javax/swing/BorderFactory^createLineBorder-(Ljava/awt/Color;)Ljavax/swing/border/Border; `a _b setBorder(Ljavax/swing/border/Border;)V de TfgetContentPane()Ljava/awt/Container; hi Qjjava/awt/Containerladd*(Ljava/awt/Component;)Ljava/awt/Component; no mppack r QsgetSize uM Qvjava/awt/DimensionxheightI z{ y|width ~{ y setLocation(II)V Q setVisible(Z)V Qjavax/swing/UIManagergetSystemLookAndFeelClassName " setLookAndFeel & java/lang/ExceptionprintStackTrace  ;InfluSim (Version für den Öffentlichen Gesundheitsdienst)-de/explosys/influenza/model/LGAInfluenzaModel ?/de/explosys/influenza/epidynet/gui/EpiMainFrame singleton(Ljava/lang/String;Lde/explosys/influenza/epidynet/models/AbstractModel;ZZLjavax/swing/Icon;)Lde/explosys/influenza/epidynet/gui/EpiMainFrame;  getImage()Ljava/awt/Image; javax/swing/JFrame setIconImage(Ljava/awt/Image;)V s v setDefaultCloseOperation(I)V dispose  QgetModel0()Lde/explosys/influenza/epidynet/models/IModel; ,de/explosys/influenza/epidynet/models/IModelupdate  screenSizeLjava/awt/Dimension; splashScreenLjavax/swing/JWindow; splashLabelLjavax/swing/JLabel; splashSizeeLjava/lang/Exception; frameSizestartstopmain([Ljava/lang/String;)Vargs[Ljava/lang/String; SourceFileLGAInfluSim.java!     _YYWYZ_$(*.13YYWYZ_$(5.17 9;@G9:'/(^!;%<>:*@C:./0; DE A%-KOKQYRLTY3WM,]cg+k,qW+t+wN-}*} -*}}-* -*+*-dl*}-}dld+ :Y37:}*} *}}* **dl*}}dld+++~:&79:;$<-=1?6@AAICTD\G]HhIvGyK~NOPSTUWXY[\_`a_cdfgh#i,j;>&6q6: mn; DE6: qr; DE 2C: yz; PK s 51-de/explosys/influenza/epidynet/InfluSim.class.'de/explosys/influenza/epidynet/InfluSimjavax/swing/JAppletframeLjavax/swing/JFrame; splashIconLjavax/swing/Icon;iconLjavax/swing/ImageIcon;class$0Ljava/lang/Class; Synthetic()VCodejavax/swing/ImageIcon 'de.explosys.influenza.epidynet.InfluSimjava/lang/ClassforName%(Ljava/lang/String;)Ljava/lang/Class;  java/lang/NoClassDefFoundErrorjava/lang/Throwable getMessage()Ljava/lang/String; !" #(Ljava/lang/String;)V %& 'InfluSim_Splash.jpg) getResource"(Ljava/lang/String;)Ljava/net/URL; +, -(Ljava/net/URL;)V %/ 0  2EpiDyNet_Icon.gif4 6 java/lang/ClassNotFoundException8LineNumberTableLocalVariableTable Exceptionsjava/awt/HeadlessException= % ? createFrame A Bthis)Lde/explosys/influenza/epidynet/InfluSim;java/awt/ToolkitFgetDefaultToolkit()Ljava/awt/Toolkit; HI GJ getScreenSize()Ljava/awt/Dimension; LM GNjavax/swing/JWindowP Q?javax/swing/JLabelS(Ljavax/swing/Icon;)V %U TVjava/awt/ColorXgrayLjava/awt/Color; Z[ Y\javax/swing/BorderFactory^createLineBorder-(Ljava/awt/Color;)Ljavax/swing/border/Border; `a _b setBorder(Ljavax/swing/border/Border;)V de TfgetContentPane()Ljava/awt/Container; hi Qjjava/awt/Containerladd*(Ljava/awt/Component;)Ljava/awt/Component; no mppack r QsgetSize uM Qvjava/awt/DimensionxheightI z{ y|width ~{ y setLocation(II)V Q setVisible(Z)V Qjavax/swing/UIManagergetSystemLookAndFeelClassName " setLookAndFeel & java/lang/ExceptionprintStackTrace  InfluSim*de/explosys/influenza/model/InfluenzaModel ?/de/explosys/influenza/epidynet/gui/EpiMainFrame singleton(Ljava/lang/String;Lde/explosys/influenza/epidynet/models/AbstractModel;ZZLjavax/swing/Icon;)Lde/explosys/influenza/epidynet/gui/EpiMainFrame;  getImage()Ljava/awt/Image; javax/swing/JFrame setIconImage(Ljava/awt/Image;)V s v setDefaultCloseOperation(I)V dispose  QgetModel0()Lde/explosys/influenza/epidynet/models/IModel; ,de/explosys/influenza/epidynet/models/IModelupdate  screenSizeLjava/awt/Dimension; splashScreenLjavax/swing/JWindow; splashLabelLjavax/swing/JLabel; splashSizeeLjava/lang/Exception; frameSizestartstopmain([Ljava/lang/String;)Vargs[Ljava/lang/String; SourceFile InfluSim.java!     _YYWYZ_$(*.13YYWYZ_$(5.17 9;@G9:'/(^!;%<>:*@C:./0; DE A%-KOKQYRLTY3WM,]cg+k,qW+t+wN-}*} -*}}-* -*+*-dl*}-}dld+ :Y37:}*} *}}* **dl*}}dld+++~:&79:;$<-=1?6@AAICTD\G]HhIvGyK~NOPTUVXYZ\]`ab`deghi#j,k;>&6q6: no; DE6: rs; DE 2C: z{; PK s 5&G0de/explosys/influenza/epidynet/UnicodeTest.class.*de/explosys/influenza/epidynet/UnicodeTestjava/lang/Object()VCode  LineNumberTableLocalVariableTablethis,Lde/explosys/influenza/epidynet/UnicodeTest;main([Ljava/lang/String;)Vargs[Ljava/lang/String; SourceFileUnicodeTest.java!/*    +  PK s 5@/de/explosys/influenza/epidynet/InfluReSim.class.)de/explosys/influenza/epidynet/InfluReSimjavax/swing/JAppletframeLjavax/swing/JFrame; splashIconLjavax/swing/Icon;iconLjavax/swing/ImageIcon;class$0Ljava/lang/Class; Synthetic()VCodejavax/swing/ImageIcon )de.explosys.influenza.epidynet.InfluReSimjava/lang/ClassforName%(Ljava/lang/String;)Ljava/lang/Class;  java/lang/NoClassDefFoundErrorjava/lang/Throwable getMessage()Ljava/lang/String; !" #(Ljava/lang/String;)V %& 'InfluSim_Splash.jpg) getResource"(Ljava/lang/String;)Ljava/net/URL; +, -(Ljava/net/URL;)V %/ 0  2EpiDyNet_Icon.gif4 6 java/lang/ClassNotFoundException8LineNumberTableLocalVariableTable Exceptionsjava/awt/HeadlessException= % ? createFrame A Bthis+Lde/explosys/influenza/epidynet/InfluReSim;java/awt/ToolkitFgetDefaultToolkit()Ljava/awt/Toolkit; HI GJ getScreenSize()Ljava/awt/Dimension; LM GNjavax/swing/JWindowP Q?javax/swing/JLabelS(Ljavax/swing/Icon;)V %U TVjava/awt/ColorXgrayLjava/awt/Color; Z[ Y\javax/swing/BorderFactory^createLineBorder-(Ljava/awt/Color;)Ljavax/swing/border/Border; `a _b setBorder(Ljavax/swing/border/Border;)V de TfgetContentPane()Ljava/awt/Container; hi Qjjava/awt/Containerladd*(Ljava/awt/Component;)Ljava/awt/Component; no mppack r QsgetSize uM Qvjava/awt/DimensionxheightI z{ y|width ~{ y setLocation(II)V Q setVisible(Z)V Qjavax/swing/UIManagergetSystemLookAndFeelClassName " setLookAndFeel & java/lang/ExceptionprintStackTrace  InfluSim4de/explosys/influenza/model/InfluenzaResistenceModel ?/de/explosys/influenza/epidynet/gui/EpiMainFrame singleton(Ljava/lang/String;Lde/explosys/influenza/epidynet/models/AbstractModel;ZZLjavax/swing/Icon;)Lde/explosys/influenza/epidynet/gui/EpiMainFrame;  getImage()Ljava/awt/Image; javax/swing/JFrame setIconImage(Ljava/awt/Image;)V s v setDefaultCloseOperation(I)V dispose  QgetModel0()Lde/explosys/influenza/epidynet/models/IModel; ,de/explosys/influenza/epidynet/models/IModelupdate  screenSizeLjava/awt/Dimension; splashScreenLjavax/swing/JWindow; splashLabelLjavax/swing/JLabel; splashSizeeLjava/lang/Exception; frameSizestartstopmain([Ljava/lang/String;)Vargs[Ljava/lang/String; SourceFileInfluReSim.java!     _YYWYZ_$(*.13YYWYZ_$(5.17 9;@G9:'/(^!;%<>:*@C:./0; DE A%-KOKQYRLTY3WM,]cg+k,qW+t+wN-}*} -*}}-* -*+*-dl*}-}dld+ :Y37:}*} *}}* **dl*}}dld+++~:&79:;$<-=1?6@AAICTD\G]HhIvGyK~NOPSTUWXY[\_`a_cdfgh#i,j;>&6q6: mn; DE6: qr; DE 2C: yz; PK c1)0de/explosys/influenza/epidynet/EpiDyNet_Icon.gifGIF87a .f3fNNNfffffrr3Nff3 !, h3H dЀ` @0! .$@,PpaN0Q$ ,H 8J00 0b@ S](@HIT  ;PK ] 57*]  2de/explosys/influenza/epidynet/InfluSim_Splash.jpgJFIFHHSoftware: Microsoft OfficeC    #%$""!&+7/&)4)!"0A149;>>>%.DIC;C  ;("(;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;"L!a1A"Qq2B#3R$Cbr4%&67DF'5Ss> !1AQa"q2B#Rb3$4Dr( ?{šZ{šZ:{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š{šZ{šZ:{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š{šZ{šZ:{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š{šZ{šZ:{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhe^qhZ{šZ{Š^qhe^qhe{šZ{šZe^qhy^)@V]ţNo7o'HQFݛƜSf^qheIg@{"C^ҝ~ߙVG'qIo$Jg{šZ)3&х6|[;uYSI.Ę&xpK z/u]2UۋG;O_cn'D~#|7;X5]Qh۸HRb8-3"YNII7<1-9{šZ{šZ,#/u]2UۋC/u]2Uۋ@ vWn- vWn-2UۋC/u]2UۋC/u]Wn- vWn- v/u]2UۋC/u]2Uۋ@ vWn- vWn-2UۋC/u]2UۋC/u]Wn- vWn- v/u]2UۋC/u]2Uۋ@ vWn- vWn-2UۋC/u]2UۋC/u]Wn- vWn- v/u]2UۋC/u]2Uۋ@ vWn- vWn-2UۋC/u]2UۋC/u]Wn- vWn- v/u]2UۋC/u]2Uۋ@ vWn- vWn-2UۋC/u]2UۋC/u]Wn- vWn- v/u]2UۋC/u]2Uۋ@ vWn- vWn-2UۋC/u]2UۋC/u]Wn- vWn- v/u]2UۋC/u]2Uۋ@ vWn- vWn-kr4kh*ETi$ Xcr\X mPRH%8{t̽vѭqԼ!@EDze5K V Q{}R#dI(DDѻ+tC=(.'wm) {)essJ\zʕ &l%|L77e|B}|/a]쌮#Yv9ˁXd׷.y"(C Fs:C࣪$F7CQGc(Wn- vWn-rK aR6q{šZ"fO &az0l}nkD-e5tK<;(_:JH-/P3e^qheU5tJĖQ54I {šZ" \!v|\MkY>"bH!8whtܚ>PѱLIR#kўR:ekUPkR衠T#% LWiTMWPzfcݐ.YԒXFvFnvF9{!!aK9) r2 ,?A N% 0\@CEQ}Xзy|#\@-n Bj\]toYHG߭#`oCryfR<ʙ,?H}N3^:JP8aúamRDF79zD{(Z`pD%RS[>VטۜȑP7aly(Rϔbw"x=`͜t܏R駩aHrfJO| kvF8`<ȣun|_o 9OPSHuPr5SxJ޶D,}K[^&R(iN%p}Aߡ y3)eL{]Z^)"X?>f:c8<_)""7ǩ3O%DM=7H+jPLkYn.n}/TK LΕ0eT0afWUD|î)69ZT9Kl@vQ0    `M#q? 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Welcome to EpiDyNet!

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X J000 substring(II)Ljava/lang/String; NsetText S mfieldgetDoubleValue()DdisableEditGroupiterator()Ljava/util/Iterator; java/util/Iteratornext()Ljava/lang/Object; getName ] mhasNext  iterLjava/util/Iterator;getValuejava/lang/Double(D)Ljava/lang/String; \  setInitialValue parseDouble(Ljava/lang/String;)D   java/lang/SystemerrLjava/io/PrintStream;  parsing exception!java/io/PrintStreamprintln S  setMinimum A + setMaximum !A +" A $java/lang/NumberFormatException&newValuee1!Ljava/lang/NumberFormatException; getSlider()Ljavax/swing/JSlider;access$0 Synthetic /access$1N(Lde/explosys/influenza/epidynet/par/DoubleParameter;)Ljavax/swing/JTextField;access$27(Lde/explosys/influenza/epidynet/par/DoubleParameter;)Daccess$3K(Lde/explosys/influenza/epidynet/par/DoubleParameter;)Ljavax/swing/JSlider;access$4access$5access$68(Lde/explosys/influenza/epidynet/par/DoubleParameter;D)Vaccess$78(Lde/explosys/influenza/epidynet/par/DoubleParameter;I)Vaccess$8access$9 access$10 SourceFileDoubleParameter.java InnerClasses!       O*+,-**** !#*g*#k$oc'**')*+Y.01"b cde!f7g?hNi2\ O34O56O76O86O96O:6OOO ;<>Y@YCFL*HYJY*LRUW[_`b*b*dg+*bkW*mYpqs**s*)w*sz*s|Y**sY*+*skW*mYq***w***z****Y**Y**W+*kW*0**)!*0Y*0 *0*s *0d*0*0Y*˶+*0kW*mYq***w**Ѷ*z****ѻY*Զ*ѻY*׶*ѹW+*ѶkW+1)ln1o<pErSs_tguvx +4<RZir234a*)J**'!#****g*#k$oc)*)* **)*)* **))*)*ݱ1*>R`2 a34a\J'*g$k**go1234Ab&****gk$oc)**s*)w1%2&34&tuk%+JY([_++1$2 %34% %/*)12 34 ~2K*mL++++*ޱ1 #(12 ( ]2*) 1 2 34 S`+I:*)I(*D*(***w*0**! *s*0dŧ *0(*=*(*ѻJY*_**Ѷ*0**!#*(!6*%*0'1F!&2AZbkp !"#2>346(( )*+,/*01&2 34-.$01212.%*s1>234.%*)14256.%*01M272.%*1C284.%*1%29:.&*'1%2;<.&*%12=2.%*Ѱ1H2>4.%*1*2?:.&*'1*2@AB:|PK s 5&__2de/explosys/influenza/epidynet/par/Parameter.class.,de/explosys/influenza/epidynet/par/Parameterjava/lang/ObjectgetTab()Ljava/lang/String;getGroupgetLabelgetName getComponent()Ljavax/swing/JComponent;getValuesetInitialValue(Ljava/lang/String;)V SourceFileParameter.java    PK s 5;de/explosys/influenza/epidynet/par/DoubleParameters$1.class. 5de/explosys/influenza/epidynet/par/DoubleParameters$1java/awt/event/MouseAdapterthis$05Lde/explosys/influenza/epidynet/par/DoubleParameters; Synthetic8(Lde/explosys/influenza/epidynet/par/DoubleParameters;)VCode()V    LineNumberTableLocalVariableTablethis7Lde/explosys/influenza/epidynet/par/DoubleParameters$1; mouseClicked(Ljava/awt/event/MouseEvent;)V3de/explosys/influenza/epidynet/par/DoubleParametersaccess$0  eLjava/awt/event/MouseEvent; SourceFileDoubleParameters.java InnerClasses0  8 * *+ Y   < [\ PK s 5X8(Lde/explosys/influenza/epidynet/par/DoubleParameters;)VCode()V   LineNumberTableLocalVariableTablethis7Lde/explosys/influenza/epidynet/par/DoubleParameters$2;actionPerformed(Ljava/awt/event/ActionEvent;)V3de/explosys/influenza/epidynet/par/DoubleParameters updateModel(I)V  eLjava/awt/event/ActionEvent; SourceFileDoubleParameters.java InnerClasses0   8 **+ ^   A * `a   !" PK s 50FF9de/explosys/influenza/epidynet/par/DoubleParameters.class.3de/explosys/influenza/epidynet/par/DoubleParameters4de/explosys/influenza/epidynet/par/AbstractParameter defaultValues[D currentValuesminValueDmaxValue nameLabelLjavax/swing/JLabel;labels[Ljava/lang/String; valueField[Ljavax/swing/JTextField;t(Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;DD[D)VCode](Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)V           javax/swing/JTextField!  #java/lang/StringBuffer%()V ' &(append(D)Ljava/lang/StringBuffer; *+ &,toString()Ljava/lang/String; ./ &0 fieldColumnsI 23 4(Ljava/lang/String;I)V 6 "7LineNumberTableLocalVariableTablethis5Lde/explosys/influenza/epidynet/par/DoubleParameters;tabLjava/lang/String;grouplabelname descriptioni getComponent()Ljavax/swing/JComponent;javax/swing/JPanelFjava/awt/FlowLayoutH(I)V J IK(Ljava/awt/LayoutManager;)V M GNjavax/swing/JLabelP @> Rjava/lang/StringTvalueOf&(Ljava/lang/Object;)Ljava/lang/String; VW UX(Ljava/lang/String;)V Z &[: ],(Ljava/lang/String;)Ljava/lang/StringBuffer; *_ &` Q[ c B> esetToolTipText gZ Qhadd*(Ljava/awt/Component;)Ljava/awt/Component; jk Gl5de/explosys/influenza/epidynet/par/DoubleParameters$1n8(Lde/explosys/influenza/epidynet/par/DoubleParameters;)V p oqaddMouseListener!(Ljava/awt/event/MouseListener;)V st "u5de/explosys/influenza/epidynet/par/DoubleParameters$2w xqaddActionListener"(Ljava/awt/event/ActionListener;)V z{ "|panelLjavax/swing/JPanel;setValue(D)VsetText Z " updateModel J valuegetDoubleValues()[DgetText / "java/lang/Double parseDouble(Ljava/lang/String;)D /de/explosys/influenza/epidynet/gui/EpiMainFrame getStatusBar3()Lde/explosys/influenza/epidynet/gui/EpiStatusBar; 0Parameter out of bounds, reset to minimum value./de/explosys/influenza/epidynet/gui/EpiStatusBarsetPermanentStatus Z 0Parameter out of bounds, reset to maximum value.java/lang/NumberFormatExceptionnewValuee!Ljava/lang/NumberFormatException;disableEditGroup editGroupLjava/util/List; java/util/Listiterator()Ljava/util/Iterator; java/util/Iteratornext()Ljava/lang/Object; getName / " setEditable(Z)V " setBorder(Ljavax/swing/border/Border;)V "hasNext()Z iterLjava/util/Iterator;fieldLjavax/swing/JTextField;getValue(D)Ljava/lang/String; . ,stringsetInitialValuesplit'(Ljava/lang/String;)[Ljava/lang/String; Uvalvaluesaccess$0 Synthetic '  SourceFileDoubleParameters.java InnerClasses!    3 y*+,-** ** * *"$6 7*    1R*$ "Y&Y)*  1-158S  DZ92 E FGHI#J,K6L<MHNmLxP:p y;<y=>y?>y@>y yA>yB>y y y 9?C3 DEGYIYLOL*QY&Y*SY\^a1bd*d*fi+*dmW=E*$2oY*rv*$2xY*y}+QY*2bmW+*$2mW*+9. SU1V<WEXJY[^lc~dXg: ;<~GNC3|.>*$2&Y)'-1**9klk(n-o: .;<. &C3<* 1I*$2I(**I(**I*$2&Y)(-1:*$2&Y)(-1* (R*}*  __9>rs uv"w'x/z8{=|E~_axr:*;<C3 s a '~2K*"L++++*ޱ9 #(1: (/=* 1L=&&Y+Y\Ѷa* 1϶a1L*+9 /;: =;< 3> /C3Z1+ѶM>* ,2R*$2,2*߱9 $0:*1;<1>* 'C3'$ݱ9:oxPK s 5  :de/explosys/influenza/epidynet/par/AbstractParameter.class.|4de/explosys/influenza/epidynet/par/AbstractParameterjavax/swing/JComponent,de/explosys/influenza/epidynet/par/Parameter editGroupLjava/util/List;tabLjava/lang/String;grouplabelname description fieldColumnsI marginColumnseditableZ()VCodejava/util/ArrayList         LineNumberTableLocalVariableTable](Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)V   & ( * , .  0this6Lde/explosys/influenza/epidynet/par/AbstractParameter;getTab()Ljava/lang/String;getGroupgetLabelgetName getComponent()Ljavax/swing/JComponent;javax/swing/JPanel;java/awt/FlowLayout=(I)V ? >@(Ljava/awt/LayoutManager;)V B <Cjavax/swing/JLabelEjava/lang/StringBufferGjava/lang/StringIvalueOf&(Ljava/lang/Object;)Ljava/lang/String; KL JM(Ljava/lang/String;)V O HP Rappend,(Ljava/lang/String;)Ljava/lang/StringBuffer; TU HV: XtoString Z5 H[ FPsetToolTipText ^O F_add*(Ljava/awt/Component;)Ljava/awt/Component; ab <cpanelLjavax/swing/JPanel; nameLabelLjavax/swing/JLabel; updateModel/de/explosys/influenza/epidynet/gui/EpiMainFramejgetModel0()Lde/explosys/influenza/epidynet/models/IModel; lm kn,de/explosys/influenza/epidynet/models/IModelpupdate r? qsr setEditable(Z)V isEditable()Z SourceFileAbstractParameter.java!        @Y!" AB#$%*%*'*+)*,+*--*/*1""GD HIJKL$M#>%23% % % % % 45/*)"S# 2365/*+"Z# 2375/*-"a# 2385/*/"h# 239:JYADLFYHY*-NQSW*/WYW\]M,*1`+,dW+"lm:nBoHp# J23:ef:ghi?B ot" t u# 23 uvw>*'" xy#23xy/*'"|# 23z{PK s 5%wXXIde/explosys/influenza/model/InfluenzaResistenceModel$NewModelAction.class.Cde/explosys/influenza/model/InfluenzaResistenceModel$NewModelAction6de/explosys/influenza/epidynet/gui/AbstractBasicAction()VCodejava/lang/ErrorGUnresolved compilation problems: The import de.explosys.influenza.model.RungeKutta2 cannot be resolved The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The field InfluenzaResistenceDgl.AGEGROUPS is not visible The field InfluenzaResistenceDgl.RISKGROUPS is not visible The method S(int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.resistency is not visible The field InfluenzaResistenceDgl.RES_YES is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method E(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.ISTAGEGROUPS is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method A(int, int, int) from the type InfluenzaResistenceDgl is not visible The method M(int, int, int) from the type InfluenzaResistenceDgl is not visible The method V(int, int, int) from the type InfluenzaResistenceDgl is not visible The method X(int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.MEDGROUPS is not visible The method W(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The method H(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.MED_NO is not visible The method D(int) from the type InfluenzaResistenceDgl is not visible The method I(int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.WorkReduction is not visible The field InfluenzaResistenceDgl.Outpatients is not visible The field InfluenzaResistenceDgl.WorkLossC is not visible The field InfluenzaResistenceDgl.Hospitalisation is not visible The field InfluenzaResistenceDgl.Antivirals is not visible The field InfluenzaResistenceDgl.AGE_CHILD is not visible The field InfluenzaResistenceDgl.AGE_ADULT is not visible The field InfluenzaResistenceDgl.AGE_ELDERLY is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method E(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method A(int, int, int) from the type InfluenzaResistenceDgl is not visible The method M(int, int, int) from the type InfluenzaResistenceDgl is not visible The method V(int, int, int) from the type InfluenzaResistenceDgl is not visible The method X(int, int, int) from the type InfluenzaResistenceDgl is not visible The method W(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The method H(int, int, int, int) from the type InfluenzaResistenceDgl is not visible  (Ljava/lang/String;)V  LineNumberTableLocalVariableTablethisELde/explosys/influenza/model/InfluenzaResistenceModel$NewModelAction;actionPerformed(Ljava/awt/event/ActionEvent;)V!Unresolved compilation problem: eLjava/awt/event/ActionEvent; SourceFileInfluenzaResistenceModel.java InnerClasses4de/explosys/influenza/model/InfluenzaResistenceModelNewModelAction!4 Y   > Y    PK s 5ӴGJ:de/explosys/influenza/model/InfluenzaResistenceModel.class.94de/explosys/influenza/model/InfluenzaResistenceModel3de/explosys/influenza/epidynet/models/AbstractModel()VCodejava/lang/ErrorGUnresolved compilation problems: The import de.explosys.influenza.model.RungeKutta2 cannot be resolved The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The constructor DoubleParameters(String, String, String, String[], String, null, double[]) is undefined The field InfluenzaResistenceDgl.AGEGROUPS is not visible The field InfluenzaResistenceDgl.RISKGROUPS is not visible The method S(int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.resistency is not visible The field InfluenzaResistenceDgl.RES_YES is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method E(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.ISTAGEGROUPS is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method A(int, int, int) from the type InfluenzaResistenceDgl is not visible The method M(int, int, int) from the type InfluenzaResistenceDgl is not visible The method V(int, int, int) from the type InfluenzaResistenceDgl is not visible The method X(int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.MEDGROUPS is not visible The method W(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The method H(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.MED_NO is not visible The method D(int) from the type InfluenzaResistenceDgl is not visible The method I(int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.WorkReduction is not visible The field InfluenzaResistenceDgl.Outpatients is not visible The field InfluenzaResistenceDgl.WorkLossC is not visible The field InfluenzaResistenceDgl.Hospitalisation is not visible The field InfluenzaResistenceDgl.Antivirals is not visible The field InfluenzaResistenceDgl.AGE_CHILD is not visible The field InfluenzaResistenceDgl.AGE_ADULT is not visible The field InfluenzaResistenceDgl.AGE_ELDERLY is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method E(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method A(int, int, int) from the type InfluenzaResistenceDgl is not visible The method M(int, int, int) from the type InfluenzaResistenceDgl is not visible The method V(int, int, int) from the type InfluenzaResistenceDgl is not visible The method X(int, int, int) from the type InfluenzaResistenceDgl is not visible The method W(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The method H(int, int, int, int) from the type InfluenzaResistenceDgl is not visible  (Ljava/lang/String;)V  LineNumberTableLocalVariableTablethis6Lde/explosys/influenza/model/InfluenzaResistenceModel;simulate(Ljava/util/List;II)V Unresolved compilation problems: The field InfluenzaResistenceDgl.AGEGROUPS is not visible The field InfluenzaResistenceDgl.RISKGROUPS is not visible The method S(int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.resistency is not visible The field InfluenzaResistenceDgl.RES_YES is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method E(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.ISTAGEGROUPS is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method A(int, int, int) from the type InfluenzaResistenceDgl is not visible The method M(int, int, int) from the type InfluenzaResistenceDgl is not visible The method V(int, int, int) from the type InfluenzaResistenceDgl is not visible The method X(int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.MEDGROUPS is not visible The method W(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The method H(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.MED_NO is not visible The method D(int) from the type InfluenzaResistenceDgl is not visible The method I(int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.WorkReduction is not visible The field InfluenzaResistenceDgl.Outpatients is not visible The field InfluenzaResistenceDgl.WorkLossC is not visible The field InfluenzaResistenceDgl.Hospitalisation is not visible The field InfluenzaResistenceDgl.Antivirals is not visible The field InfluenzaResistenceDgl.AGE_CHILD is not visible The field InfluenzaResistenceDgl.AGE_ADULT is not visible The field InfluenzaResistenceDgl.AGE_ELDERLY is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method E(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The field InfluenzaResistenceDgl.resistencyGroups is not visible The method A(int, int, int) from the type InfluenzaResistenceDgl is not visible The method M(int, int, int) from the type InfluenzaResistenceDgl is not visible The method V(int, int, int) from the type InfluenzaResistenceDgl is not visible The method X(int, int, int) from the type InfluenzaResistenceDgl is not visible The method W(int, int, int, int) from the type InfluenzaResistenceDgl is not visible The method H(int, int, int, int) from the type InfluenzaResistenceDgl is not visible  variableListLjava/util/List;daysIrepeats getAction()Ljavax/swing/Action;!Unresolved compilation problem: initPopulation(I)Vsize(Ljava/lang/String;III)VnetLjava/lang/String;popSizecontactsgroupsloadsavegetType()Ljava/lang/String; getFractPanel()Ljavax/swing/JPanel;getIndividualState(II)Ljava/lang/String;daynode SourceFileInfluenzaResistenceModel.java InnerClassesCde/explosys/influenza/model/InfluenzaResistenceModel$NewModelAction6NewModelAction! 4 Y   R Y*     * Y !> Y  " #\ Y4  $% & ' ()4 Y  *4 Y  +,4 Y  -.4 Y  /0H Y   1 2345 78 PK s 5$?de/explosys/influenza/model/InfluenzaResistenceDglAdapter.class.?9de/explosys/influenza/model/InfluenzaResistenceDglAdapter1de/explosys/influenza/util/InfluenzaResistenceDglmodel6Lde/explosys/influenza/model/InfluenzaResistenceModel;9(Lde/explosys/influenza/model/InfluenzaResistenceModel;)VCode()V     getParameterValues   initialize  LineNumberTableLocalVariableTablethis;Lde/explosys/influenza/model/InfluenzaResistenceDglAdapter;java/lang/Error;Unresolved compilation problems: The field InfluenzaResistenceDgl.individuals is not visible The field InfluenzaResistenceDgl.individuals is not visible The field InfluenzaResistenceDgl.ageRisk is not visible The field InfluenzaResistenceDgl.ageRisk is not visible The field InfluenzaResistenceDgl.childrenMix is not visible The field InfluenzaResistenceDgl.childrenMix is not visible The field InfluenzaResistenceDgl.workingMix is not visible The field InfluenzaResistenceDgl.workingMix is not visible The field InfluenzaResistenceDgl.retiredMix is not visible The field InfluenzaResistenceDgl.retiredMix is not visible The field InfluenzaResistenceDgl.expDur is not visible The field InfluenzaResistenceDgl.expDur is not visible The field InfluenzaResistenceDgl.infDurMild is not visible The field InfluenzaResistenceDgl.infDurMild is not visible The field InfluenzaResistenceDgl.infDurSevere is not visible The field InfluenzaResistenceDgl.infDurSevere is not visible The field InfluenzaResistenceDgl.recDur is not visible The field InfluenzaResistenceDgl.recDur is not visible The field InfluenzaResistenceDgl.asymptomaticFraction is not visible The field InfluenzaResistenceDgl.asymptomaticFraction is not visible The field InfluenzaResistenceDgl.severeFraction is not visible The field InfluenzaResistenceDgl.severeFraction is not visible The field InfluenzaResistenceDgl.hospitalLow is not visible The field InfluenzaResistenceDgl.hospitalLow is not visible The field InfluenzaResistenceDgl.hospitalHigh is not visible The field InfluenzaResistenceDgl.hospitalHigh is not visible The field InfluenzaResistenceDgl.deadFractionUntreated is not visible The field InfluenzaResistenceDgl.deadFractionUntreated is not visible The field InfluenzaResistenceDgl.r0 is not visible The field InfluenzaResistenceDgl.r0 is not visible The field InfluenzaResistenceDgl.eInfFact is not visible The field InfluenzaResistenceDgl.eInfFact is not visible The field InfluenzaResistenceDgl.infFactAsymptomatic is not visible The field InfluenzaResistenceDgl.infFactAsymptomatic is not visible The field InfluenzaResistenceDgl.infFactSevere is not visible The field InfluenzaResistenceDgl.infFactSevere is not visible The field InfluenzaResistenceDgl.antiviralRessource is not visible The field InfluenzaResistenceDgl.antiviralRessource is not visible The field InfluenzaResistenceDgl.consultationDelay is not visible The field InfluenzaResistenceDgl.consultationDelay is not visible The field InfluenzaResistenceDgl.maxTreatmentDelay is not visible The field InfluenzaResistenceDgl.maxTreatmentDelay is not visible The field InfluenzaResistenceDgl.severeTreatFract is not visible The field InfluenzaResistenceDgl.severeTreatFract is not visible The field InfluenzaResistenceDgl.severeTreatBegin is not visible The field InfluenzaResistenceDgl.severeTreatBegin is not visible The field InfluenzaResistenceDgl.severeTreatEnd is not visible The field InfluenzaResistenceDgl.severeTreatEnd is not visible The field InfluenzaResistenceDgl.extremeTreatFract is not visible The field InfluenzaResistenceDgl.extremeTreatFract is not visible The field InfluenzaResistenceDgl.extremeTreatBegin is not visible The field InfluenzaResistenceDgl.extremeTreatBegin is not visible The field InfluenzaResistenceDgl.extremeTreatEnd is not visible The field InfluenzaResistenceDgl.extremeTreatEnd is not visible The field InfluenzaResistenceDgl.treatEfficacyInfectiousness is not visible The field InfluenzaResistenceDgl.treatEfficacyInfectiousness is not visible The field InfluenzaResistenceDgl.infDurReduction is not visible The field InfluenzaResistenceDgl.infDurReduction is not visible The field InfluenzaResistenceDgl.treatHospPrev is not visible The field InfluenzaResistenceDgl.treatHospPrev is not visible The field InfluenzaResistenceDgl.deadPrevTreat is not visible The field InfluenzaResistenceDgl.deadPrevTreat is not visible The field InfluenzaResistenceDgl.resistantFraction is not visible The field InfluenzaResistenceDgl.resistantFraction is not visible The field InfluenzaResistenceDgl.resistantFraction is not visible The field InfluenzaResistenceDgl.isolationModerately is not visible The field InfluenzaResistenceDgl.isolationModerately is not visible The field InfluenzaResistenceDgl.isolationHome is not visible The field InfluenzaResistenceDgl.isolationHome is not visible The field InfluenzaResistenceDgl.isolationHospital is not visible The field InfluenzaResistenceDgl.isolationHospital is not visible The field InfluenzaResistenceDgl.generalReductionFraction is not visible The field InfluenzaResistenceDgl.generalReductionFraction is not visible The field InfluenzaResistenceDgl.generalReductionBegin is not visible The field InfluenzaResistenceDgl.generalReductionBegin is not visible The field InfluenzaResistenceDgl.generalReductionEnd is not visible The field InfluenzaResistenceDgl.generalReductionEnd is not visible The field InfluenzaResistenceDgl.schoolClosingFraction is not visible The field InfluenzaResistenceDgl.schoolClosingFraction is not visible The field InfluenzaResistenceDgl.schoolClosingBegin is not visible The field InfluenzaResistenceDgl.schoolClosingBegin is not visible The field InfluenzaResistenceDgl.schoolClosingEnd is not visible The field InfluenzaResistenceDgl.schoolClosingEnd is not visible The field InfluenzaResistenceDgl.reDistribute is not visible The field InfluenzaResistenceDgl.reDistribute is not visible The field InfluenzaResistenceDgl.eventCancelingFraction is not visible The field InfluenzaResistenceDgl.eventCancelingFraction is not visible The field InfluenzaResistenceDgl.eventCancelingBegin is not visible The field InfluenzaResistenceDgl.eventCancelingBegin is not visible The field InfluenzaResistenceDgl.eventCancelingEnd is not visible The field InfluenzaResistenceDgl.eventCancelingEnd is not visible (Ljava/lang/String;)V  divideArrayBy100([D)[D@Ypercent[DiImultiplyArrayBy100getDoubleParameter(Ljava/lang/String;D)D4de/explosys/influenza/model/InfluenzaResistenceModel+ getParameterB(Ljava/lang/String;)Lde/explosys/influenza/epidynet/par/Parameter; -. ,/(Ljava/lang/String;)D )1 ,2stringLjava/lang/String;parDgetDoubleParameters(Ljava/lang/String;[D)[D(Ljava/lang/String;)[D 8: ,; SourceFile"InfluenzaResistenceDglAdapter.java! V* *+**    4 Y   ! c=+\1"oR++RSRU $%&'(! c=+\1"kR++YZY\ $%&')* \*+0 *+3I(a bd 456789 \*+0 *+PK s 50*de/explosys/influenza/model/Messages.class.?$de/explosys/influenza/model/Messagesjava/lang/Object BUNDLE_NAMELjava/lang/String; ConstantValue$de.explosys.influenza.model.messagesRESOURCE_BUNDLELjava/util/ResourceBundle;()VCodejava/util/ResourceBundle getBundle.(Ljava/lang/String;)Ljava/util/ResourceBundle;   LineNumberTableLocalVariableTable  this&Lde/explosys/influenza/model/Messages; getString&(Ljava/lang/String;)Ljava/lang/String;   java/lang/StringBuffer"java/lang/String$valueOf(C)Ljava/lang/String; &' %((Ljava/lang/String;)V * #+append,(Ljava/lang/String;)Ljava/lang/StringBuffer; -. #/(C)Ljava/lang/StringBuffer; -1 #2toString()Ljava/lang/String; 45 #6"java/util/MissingResourceException8keye$Ljava/util/MissingResourceException; SourceFile Messages.java!   1    3*   f"*!L#Y!),*0!379 ": ;<=>PK s 53Byy5de/explosys/influenza/model/InfluenzaDglAdapter.class./de/explosys/influenza/model/InfluenzaDglAdapter(de/explosys/influenza/model/InfluenzaDglmodel,Lde/explosys/influenza/model/InfluenzaModel;/(Lde/explosys/influenza/model/InfluenzaModel;)VCode()V     getParameterValues   initialize  LineNumberTableLocalVariableTablethis1Lde/explosys/influenza/model/InfluenzaDglAdapter; individuals[D  getDoubleParameters(Ljava/lang/String;[D)[D   ageRisks"ageRisk $ %getPercentParameters ' ( childrenMix* * , workingMix. . 0 retiredMix2 2 4expDurD 67 86 infDurMild; ; = infDurSevere? ? ArecDur C7 DCasymptomaticFractionG@Y G7 KgetDoubleParameter(Ljava/lang/String;D)D MN OsevereFractionQ Q7 S hospitalLowU U W hospitalHighY Y [deadFractionUntreated] ] _r0a a7 ceInfFacte e7 ginfFactAsymptomatici i7 k infFactSeverem m7 ohalfInfectiosityq q7 santiviralRessourceu u7 wconsultationDelayy@8 y7 }maxTreatmentDelay 7 severeTreatFract 7 severeTreatBegin 7 severeTreatEnd 7 extremeTreatFract 7 extremeTreatBegin 7 extremeTreatEnd 7 treatEfficacyInfectiousness 7 infDurReduction 7  treatHospPrev 7 isolationModerately 7  isolationHome 7 isolationHospital 7 isolationBegin 7  isolationEnd 7 generalReductionFraction 7 generalReductionBegin 7 generalReductionEnd 7 schoolContactsFraction 7 schoolClosingBegin 7 schoolClosingEnd 7  reDistribute 7 eventCancelingFraction 7 eventCancelingBegin 7 eventCancelingEnd 7 expDursrecDurs*de/explosys/influenza/model/InfluenzaModel getParameterB(Ljava/lang/String;)Lde/explosys/influenza/epidynet/par/Parameter; (Ljava/lang/String;)D M stringLjava/lang/String;par(Ljava/lang/String;)[D   parametersiI SourceFileInfluenzaDglAdapter.java! V* *+**    GA***!**#*&)&**+*-!-**/*1!1**3*5!5L+*9R**:+!19**<*>!>**@*B!BM,*ER**F,!1E**HI*LkPIoL**RI*TkPIoT**V*X)X**Z*\)\**^*`)`**b*dPd**fI*hkPIoh**jI*lkPIol**nI*pkPIop**rI*tkPIot**vI*xkPIox**z{*~kP{o~**{*kP{o**I*kPIo***P***P**I*kPIo***P***P**I*kPIo**I*kPIo**I*kPIo**I*kPIo**I*kPIo**I*kPIo***P***P**I*kPIo***·P***ƷP**I*kPIo***ηP***ҷP**I*kPIo**I*kPIo***޷P***P3*8 F!J"Q#^$l%z&~'()*+,-./ 0"182N3d4z56789:;< = >6?L@bAxBCDEFGHIJK$L2M@N AJ~MN \*+ *+I(R SU 7 \*+ *+M,[ \^ ' 2*+(*+N6,-1IoR,,b cde&d0h4222PK s 5tRR3de/explosys/influenza/model/LGAInfluenzaModel.class.-de/explosys/influenza/model/LGAInfluenzaModel*de/explosys/influenza/model/InfluenzaModel()VCode  LineNumberTableLocalVariableTablethis/Lde/explosys/influenza/model/LGAInfluenzaModel;initUserInterfaceAllgemeine EinstellungenErkrankungsparameter BehandlungInfektiositätWeitere Interventionen VerweilzeitenCostsjava/lang/StringKinder: Erwachsene:!Ältere:#@Ё@@3de/explosys/influenza/epidynet/par/DoubleParameters+Altersverteilung-Anzahl Individuen/ individuals1@jt(Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;DD[D)V 5 ,6add1(Lde/explosys/influenza/epidynet/par/Parameter;)V 89 :@@,@GAnteil unter Risiko [%]BageRisksD@Y2de/explosys/influenza/epidynet/par/DoubleParameterHBasisreproduktionszahlJR0Lr0N@@`(Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;DDD)V T IUGAnsteckungsfähigkeit in der ersten Hälfte der symptomatischen PeriodeWAnteilYhalfInfectiosity[@I@V+Verfügbarkeit von NeuraminidaseinhibitorenaAnteil der Bevölkerung [%]cantiviralRessourcee@4von schwer Erkrankten [%]isevereTreatFractkvon sehr schwer Erkrankten [%]mextremeTreatFractoPartielle Isolationqvon moderat Erkrankten [%]sisolationModeratelyu"von schwer Erkrankten zu Hause [%]w isolationHomey#von hospitalisierten Erkrankten [%]{isolationHospital}$Kontaktreduktion in der BevölkerungKontaktreduktion um [%]generalReductionFractionBeginn der Maßnahme [Tag]generalReductionBegin@@Ende der Maßnahme [Tag]generalReductionEnd)Schließung von Kindergärten und Schulen!Kind-Kind-Kontakte in Schulen [%]schoolContactsFractionschoolClosingBeginschoolClosingEnd)Umverteilung eingesparter Kontakte in [%] reDistribute Absage von MassenveranstaltungeneventCancelingFractioneventCancelingBegineventCancelingEndKostenEuro pro Woche ArbeitsausfallweeklyWorkCost@È@@Euro pro ArztbesuchoutpatientCost@bEuro pro HospitalisierunghospitalisationCost@#Euro pro antivirale TherapieeinheittreatmentDosisCost@.generalLjava/lang/String;disease antiviralscontagiousness interventions durationscosts entryNames[Ljava/lang/String; entryNames1 entryNames2defaultEntries[D defaultRisks SourceFileLGAInfluenzaModel.java!3*  %&   LMN::::Y SY"SY$S:Y"SY$S: Y$S: Y%RY'RY)R: *,Y+.023 7;YRY@R: *,Y+.CEF 7;*IY+KMOPRV;*IY+XZ\]F_V;*IY+bdfggV;*IY+jlFV;*IY+npFV;*IYrtv]V;*IYrxz]V;*IYr|~]V;*IYgV;*IYV;*IYV;*IYgV;*IYV;*IYV;*IYFV;*IYgV;*IYV;*IYV;*IY+V;*IY+V;*IY+V;*IY+FV; %*+, - ./14.5>6I7`8{9:VW\`c-lFm_nxpqrtuvw+yDz]{x}~    .> I ` O PK s 5C6?de/explosys/influenza/model/InfluenzaModel$NewModelAction.class..9de/explosys/influenza/model/InfluenzaModel$NewModelAction6de/explosys/influenza/epidynet/gui/AbstractBasicAction()VCode  Deterministic - Global - SEIRS setName(Ljava/lang/String;)V 4The basic Susceptible-Exposed-Infected-Removed modelsetDesc   setEnabled(Z)V  LineNumberTableLocalVariableTablethis;Lde/explosys/influenza/model/InfluenzaModel$NewModelAction;actionPerformed(Ljava/awt/event/ActionEvent;)V*de/explosys/influenza/model/InfluenzaModel /de/explosys/influenza/epidynet/gui/EpiMainFrame"setModel8(Lde/explosys/influenza/epidynet/models/AbstractModel;)V $% #&eLjava/awt/event/ActionEvent; SourceFileInfluenzaModel.java InnerClassesNewModelAction!P* * **  C Y!'     ()*+,  - PK s 5qSŰHH0de/explosys/influenza/model/InfluenzaModel.class.*de/explosys/influenza/model/InfluenzaModel3de/explosys/influenza/epidynet/models/AbstractModel()VCode  initUserInterface   InfluenzaModel.individualsUnit $de/explosys/influenza/model/Messages getString&(Ljava/lang/String;)Ljava/lang/String;  InfluenzaModel.euroUnitInfluenzaModel.infectionViewInfluenzaModel.ressourceViewInfluenzaModel.cumulativeViewInfluenzaModel.costsViewInfluenzaModel.susceptibleGraphInfluenzaModel.exposedGraph! InfluenzaModel.asymptomaticGraph#InfluenzaModel.moderateGraph%InfluenzaModel.severeGraph'InfluenzaModel.deadGraph)InfluenzaModel.immuneGraph+InfluenzaModel.workLossGraph- InfluenzaModel.workLossWeekGraph/InfluenzaModel.outpatientsGraph1 InfluenzaModel.hospitalBedsGraph3$InfluenzaModel.hospitalisationsGraph5 InfluenzaModel.hospitalizedGraph7InfluenzaModel.antiviralsGraph9InfluenzaModel.totalGraph;java/awt/Color=blueLjava/awt/Color; ?@ >A addVariableJ(Ljava/lang/String;BLjava/lang/String;Ljava/awt/Color;Ljava/lang/String;)V CD Ecyan G@ >Hyellow J@ >Korange M@ >Nred P@ >Qblack S@ >Tgreen V@ >WpopSizeI Z[ \setSize(I)V ^_ `LineNumberTableLocalVariableTablethis,Lde/explosys/influenza/model/InfluenzaModel;bBindividualsUnitLjava/lang/String;euroUnit infectionView ressourceViewcumulativeView costsViewsusceptibleGraph exposedGraphasymptomaticGraph moderateGraph severeGraph deadGraph immuneGraph workLossGraphworkLossWeekGraphoutpatientsGraphhospitalBedsGraphhospitalisationsGraphhospitalizedGraphantiviralsGraph totalGraph!InfluenzaModel.generalSettingsTab~#InfluenzaModel.ageDistributionGroup!InfluenzaModel.contactMatrixGroupInfluenzaModel.costsGroupInfluenzaModel.individualsLabelInfluenzaModel.ageRisksLabelInfluenzaModel.childrenMixLabelInfluenzaModel.workingMixLabelInfluenzaModel.elderlyMixLabel"InfluenzaModel.weeklyWorkCostLabel"InfluenzaModel.outpatientCostLabel'InfluenzaModel.hospitalisationCostLabel*InfluenzaModel.antiviralTreatmentCostLabelInfluenzaModel.childrenNameInfluenzaModel.workingNameInfluenzaModel.elderlyNamejava/lang/String@f@$`@@3de/explosys/influenza/epidynet/par/DoubleParameters individualsAׄt(Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;DD[D)V  add1(Lde/explosys/influenza/epidynet/par/Parameter;)V @@,@GageRisks@Y@`Q@; =q@' childrenMix?@N}p =@:\( workingMix@K(\ retiredMix2de/explosys/influenza/epidynet/par/DoubleParameterweeklyWorkCost@È@@`(Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;DDD)V  outpatientCost@bhospitalisationCost@treatmentDosisCost@.InfluenzaModel.diseaseTab$InfluenzaModel.averageDurationsGroup#InfluenzaModel.diseaseSeverityGroup%InfluenzaModel.hospitalizedCasesGroup InfluenzaModel.caseFatalityGroupInfluenzaModel.allAgesNameInfluenzaModel.expDurLabelInfluenzaModel.infDurMildLabel InfluenzaModel.infDurSevereLabelInfluenzaModel.recDurLabel(InfluenzaModel.asymptomaticFractionLabel"InfluenzaModel.severeFractionLabelInfluenzaModel.hospitalLowLabel InfluenzaModel.hospitalHighLabel)InfluenzaModel.deadFractionUntreatedLabel?ffffffexpDur @@ffffff infDurMild infDurSevere@recDurasymptomaticFraction@@severeFraction@I?-V@E@ zG{ hospitalLow&?S@tj@nO hospitalHigh.@)lD@0-@C =qdeadFractionUntreated6 InfluenzaModel.contagiousnessTab8+InfluenzaModel.basicReproductionNumberGroup:"InfluenzaModel.contagiousnessGroup<*InfluenzaModel.relativeContagiousnessGroup>InfluenzaModel.r0Label@#InfluenzaModel.halfInfectosityLabelBInfluenzaModel.eInfFactLabelD'InfluenzaModel.infFactAsymptomaticLabelF!InfluenzaModel.infFactSevereLabelHr0J@halfInfectiosityN@VeInfFactR@iinfFactAsymptomaticV infFactSevereXInfluenzaModel.treatmentTabZInfluenzaModel.ressourcesGroup\InfluenzaModel.scheduleGroup^*InfluenzaModel.treatmentOfSevereCasesGroup`1InfluenzaModel.treatmentOfExtremelySickCasesGroupb$InfluenzaModel.treatmentEffectsGroupd&InfluenzaModel.antiviralRessourceLabelf%InfluenzaModel.consultationDelayLabelh%InfluenzaModel.maxTreatmentDelayLabeljInfluenzaModel.treatFractLabellInfluenzaModel.beginOnDayLabelnInfluenzaModel.endOnDayLabelp/InfluenzaModel.treatEfficacyInfectiousnessLabelr#InfluenzaModel.infDurReductionLabelt!InfluenzaModel.treatHospPrevLabelvantiviralRessourcexconsultationDelayz@Y@@8maxTreatmentDelay@HsevereTreatFractsevereTreatBegin@@severeTreatEndextremeTreatFractextremeTreatBeginextremeTreatEndtreatEfficacyInfectiousness@TinfDurReduction@9 treatHospPrev"InfluenzaModel.socialDistancingTab$InfluenzaModel.partialIsolationGroup$InfluenzaModel.generalReductionGroupInfluenzaModel.dayCareGroup!InfluenzaModel.massGatheringGroup'InfluenzaModel.isolationModeratelyLabel!InfluenzaModel.isolationHomeLabel%InfluenzaModel.isolationHospitalLabel,InfluenzaModel.generalReductionFractionLabel*InfluenzaModel.schoolContactsFractionLabel InfluenzaModel.reDistributeLabel*InfluenzaModel.eventCancelingFractionLabelisolationModerately isolationHomeisolationHospitalisolationBegin isolationEndgeneralReductionFractiongeneralReductionBegingeneralReductionEndschoolContactsFractionschoolClosingBeginschoolClosingEnd reDistributeeventCancelingFractioneventCancelingBegineventCancelingEndgeneralSettingsTabageDistributionGroupcontactMatrixGroup costsGroupindividualsLabel ageRisksLabelchildrenMixLabelworkingMixLabelelderlyMixLabelweeklyWorkCostLabeloutpatientCostLabelhospitalisationCostLabelantiviralTreatmentCostLabel childrenName workingName elderlyName entryNames[Ljava/lang/String; entryNames1 entryNames2defaultEntries[D defaultRisks childrenSus workingSus retiredSus diseaseTabaverageDurationsGroupdiseaseSeverityGrouphospitalizedCasesGroupcaseFatalityGroup allAgesName expDurLabelinfDurMildLabelinfDurSevereLabel recDurLabelasymptomaticFractionLabelsevereFractionLabelhospitalLowLabelhospitalHighLabeldeadFractionUntreatedLabelentryAll defaultExpDurdefaultInfDurMilddefaultInfDurSevereworking defaultRecDurdefaultSevereLowFractionsdefaultSevereHighFractionsdefaultDeadFractionUntreatedcontagiousnessTabbasicReproductionNumberGroupcontagiousnessGrouprelativeContagiousnessGroupr0LabelhalfInfectosityLabel eInfFactLabelinfFactAsymptomaticLabelinfFactSevereLabel treatmentTabressourcesGroup scheduleGrouptreatmentOfSevereCasesGroup"treatmentOfExtremelySickCasesGrouptreatmentEffectsGroupantiviralRessourceLabelconsultationDelayLabelmaxTreatmentDelayLabeltreatFractLabelbeginOnDayLabel endOnDayLabel treatEfficacyInfectiousnessLabelinfDurReductionLabeltreatHospPrevLabelsocialDistancingTabpartialIsolationGroupgeneralReductionGroup dayCareGroupmassGatheringGroupisolationModeratelyLabelisolationHomeLabelisolationHospitalLabelgeneralReductionFractionLabelschoolContactsFractionLabelreDistributeLabeleventCancelingFractionLabelsimulate(Ljava/util/List;II)Vjava/lang/System*currentTimeMillis()J ,- +.getDoubleParameters(Ljava/lang/String;)[D 01 2java/util/List4iterator()Ljava/util/Iterator; 67 58java/util/Iterator:next()Ljava/lang/Object; <= ;>.de/explosys/influenza/epidynet/models/Variable@ clearRawData B AChasNext()Z EF ;G/de/explosys/influenza/model/InfluenzaDglAdapterI/(Lde/explosys/influenza/model/InfluenzaModel;)V K JL(de/explosys/influenza/model/InfluenzaDglN getInitialY()[D PQ OR getInitialX()D TU OV+de/explosys/influenza/odesolver/RungeKutta4X9(Lde/explosys/influenza/odesolver/DifferentialEquation;)V Z Y[setStart(D[D)V ]^ Y_/de/explosys/influenza/epidynet/gui/EpiMainFrameasetProgressBar c_ bdrun(D)V fg YhgetY jQ YkS(II)I mn OoE(III)I qr OsA un OvM xn OyV {n O|X ~n OW r OH r OD(I)I  O [ OgetDoubleParameter(Ljava/lang/String;)D  ?get(I)Ljava/lang/Object;  5 addDoubleData([DI)V  A getStatusBar3()Lde/explosys/influenza/epidynet/gui/EpiStatusBar;  b/de/explosys/influenza/epidynet/gui/EpiStatusBarsetPermanentStatus(Ljava/lang/String;)V   setChanged  notifyObservers  java/lang/Threadyield   variableListLjava/util/List;daysrepeatstime1JiLjava/util/Iterator;variable0Lde/explosys/influenza/epidynet/models/Variable;resetZVXOPWRHBAVDID1D2D3DI1DI2DI3OPCWRCHCAVCOPEWREHEAVETEResTDProofdgl*Lde/explosys/influenza/model/InfluenzaDgl;startYstartXrk4-Lde/explosys/influenza/odesolver/RungeKutta4;tEres outVectorageriskeStageiStagemedsumInftime2 getAction()Ljavax/swing/Action;9de/explosys/influenza/model/InfluenzaModel$NewModelAction initPopulationsize(Ljava/lang/String;III)VnetcontactsgroupsloadsavegetType()Ljava/lang/String; SEIRSModel getFractPanel()Ljavax/swing/JPanel;getIndividualState(II)Ljava/lang/String;daynode SourceFileInfluenzaModel.java InnerClassesNewModelAction! l* <* MN:::: :": $: &: (: *: ,:.:0:2:4:6:8:::<:*B,F* I,F* L,F* O,F* R,F* U,F*X,F*B,F*O,F*R,F*X,F*B,F*O,F*R,F*X,F*B-F*O-F*R-F*X-F*U-F*Y]**]ab/%&( *+-.$/+02293@4G5N6U7\8c:j;q<x=>?@ACDEFGHIKLMN*P7QDRQS^UkVxWXY[\^cdefghijiki$li+mi2|ni9uoi@npi Ggqi N`ri UYsi \Rti cKuijDviq=wix6xi/yi(zi!{i|i}i ULMN:::::: : : : : :::YSYSYS:YSYS:YS:YRYRYR:*Y+,YRYRYR:*Y+,YRYRYR:*Y+-YRYR:*Y+-YR:*Y+- *Y+ ٷݶ*Y+ ݶ*Y+ ݶ*Y+ ݶ:::::::: :!:":#:$:%:&:'YS:(YR:)*Y( )Y RYRYR:**Y *Y RY RY R:+*Y!+YS:,YR:-*Y",-*Y#ݶ*Y$ݶY RY"RY$R:.*Y%'.Y(RY*RY,R:/*Y&//Y0RY2RY4R:0*Y'709:1;:2=:3?:4A:5C:6E:7G:8I:9*Y125KLݶ*Y136OPݶ*Y147STݶ*Y148WTݶ*Y149YTݶ[::]:;_:<a:=c:>e:?g:@i:Ak:Bm:Co:Dq:Es:Fu:Gw:H*Y:;@yݶ*Y:<A{|~ݶ*Y:<B|ݶ*Y:=Cݶ*Y:=Dݶ*Y:=Eݶ*Y:>Cݶ*Y:>Dݶ*Y:>Eݶ*Y:?Fݶ*Y:?Gݶ*Y:?Hݶ:I:J:K:L:M:N:O:P:Q:R:S:T*Y1JNݶ*Y1JOݶ*Y1JPݶ*Y1JDݶ*Y1JEݶ*YIKQݶ*YIKDݶ*YIKEݶ*YILRݶ*YILDݶ*YILEݶ*YILSݶ*YIMTݶ*YIMDݶ*YIMEݶbbd efh i'k.l5m<oCpJqQrXt_ufvmxyz{|}~2C_j &-4;CKS[fq1Mi %-5=EMi #+3;CKSo+Gc/Ic7QkcTUdei zitimi fi'_i.Xi5Qi<Ji CCi J<i Q5i X.i _'if imipCCjiii |iuinigi&`i -Yi!4Ri";Ki#CCi$K;i%S3i&[+i'f (q)*+,t-./0 yi1qi2ii3%ai4-Yi55Q i6=I i7EA i8M9 i9 i:i;i<i=i> {i?si@kiA#ciB+[iC3SiD;KiECCiFK;iGS3iHiIiJiKiL iM!iN"iO#iP$iQ%iR&iS'iT() 4/7*]*3:6*Y]1c]+9:?A:DH6`:`: `: `: `: `: `:`:`:`:`:`:`:`:`:`:`:`:`:`:`:`:`:`:`: `:!`:"`:#`:$`:%JY*M:&&S:'&W9(YY&\:**('`6+d+hle+R +R +R +R +R +R+R+R+R+R+R+R+R+R+R+R+R+R+R+R+R+R+R+R +R!+R"+R#+R%+R*+i9,*l:.6/60<+\1./0p1cR61 +\1./01t1cR110060 +\1./0w1cR +\1./0z1cR +\1./0}1cR +\1./01cR61B +\1./011cR +\1./011cR+\1./011cR1100f 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InfluenzaModel.asymptomaticGraph=Asymptomatisch InfluenzaModel.moderateGraph=Moderat InfluenzaModel.severeGraph=Schwer InfluenzaModel.deadGraph=Tot InfluenzaModel.immuneGraph=Immun InfluenzaModel.workLossGraph=Arbeitsausfall InfluenzaModel.workLossWeekGraph=Arbeitsausfall [Wochen] InfluenzaModel.outpatientsGraph=Arztbesuche InfluenzaModel.hospitalBedsGraph=Krankenhausbetten InfluenzaModel.hospitalisationsGraph=Hospitalisierungen InfluenzaModel.hospitalizedGraph=Hospitalisiert InfluenzaModel.antiviralsGraph=Antivirale Dosen InfluenzaModel.totalGraph=Total InfluenzaModel.generalSettingsTab=Allgemeine Einstellungen InfluenzaModel.ageDistributionGroup=Altersverteilung InfluenzaModel.contactMatrixGroup=Kontaktmatrix InfluenzaModel.costsGroup=Kosten InfluenzaModel.individualsLabel=Anzahl der Individuen InfluenzaModel.ageRisksLabel=Unter Risiko [%] InfluenzaModel.childrenMixLabel=Von Kindern zu InfluenzaModel.workingMixLabel=Von Arbeitsfhigen zu InfluenzaModel.elderlyMixLabel=Von lteren zu InfluenzaModel.weeklyWorkCostLabel=\u20AC / Woche Arbeitsausfall InfluenzaModel.outpatientCostLabel=\u20AC / Arztbesuch InfluenzaModel.hospitalisationCostLabel=\u20AC / Hospitalisierung InfluenzaModel.antiviralTreatmentCostLabel=\u20AC / Antivirale Behandlung InfluenzaModel.childrenName=Kindern: InfluenzaModel.workingName=Arbeitsfhigen: InfluenzaModel.elderlyName=lteren: InfluenzaModel.diseaseTab=Erkrankungsverlauf InfluenzaModel.averageDurationsGroup=Mittlere Dauern InfluenzaModel.diseaseSeverityGroup=Schweregrad der Erkrankung InfluenzaModel.hospitalizedCasesGroup=Anteil der hospitalisierten Flle unter den unbehandelten schweren Fllen InfluenzaModel.caseFatalityGroup=Lethalitt InfluenzaModel.allAgesName=Alle Altersklassen: InfluenzaModel.expDurLabel=Inkubationszeit [d] InfluenzaModel.infDurMildLabel=Asymptomatischer und moderater Krankheitsverlauf [d] InfluenzaModel.infDurSevereLabel=Schwerer Krankheitsverlauf [d] InfluenzaModel.recDurLabel=\ Rekonvaleszenz [d] InfluenzaModel.asymptomaticFractionLabel=Asymptomatischer Verlauf [%] InfluenzaModel.severeFractionLabel=Schwerer Verlauf unter den symptomatischen Fllen [%] InfluenzaModel.hospitalLowLabel=Niedrigrisikogruppe [%] InfluenzaModel.hospitalHighLabel=Hochrisikogruppe [%] InfluenzaModel.deadFractionUntreatedLabel=Prozent unbehandelter schwer Erkrankter InfluenzaModel.contagiousnessTab=Infektiositt InfluenzaModel.basicReproductionNumberGroup=Basisreproduktionszahl InfluenzaModel.contagiousnessGroup=Infektiositt in der ersten Erkrankungshlfte InfluenzaModel.relativeContagiousnessGroup=Relative Infektiositt im Vergleich zu moderat erkrankten InfluenzaModel.r0Label=R0 InfluenzaModel.halfInfectosityLabel=Anteil [%] InfluenzaModel.eInfFactLabel=Prodromalperiode [%] InfluenzaModel.infFactAsymptomaticLabel=Asymptomatische Flle [%] InfluenzaModel.infFactSevereLabel=Schwere Flle [%] InfluenzaModel.treatmentTab=Behandlung InfluenzaModel.ressourcesGroup=Ressourcen InfluenzaModel.scheduleGroup=Behandlungszeitplan (Mittelwerte) InfluenzaModel.treatmentOfSevereCasesGroup=Behandlung schwerer Flle InfluenzaModel.treatmentOfExtremelySickCasesGroup=Behandlung extrem schwerer Flle InfluenzaModel.treatmentEffectsGroup=Behandlungseffekte InfluenzaModel.antiviralRessourceLabel=Verfgbarkeit antiviraler Medikamente [%] InfluenzaModel.consultationDelayLabel=Arztbesuch [Stunden nach Symptombeginn] InfluenzaModel.maxTreatmentDelayLabel=Therapeutisches Fenster [Stunden nach Symptombeginn] InfluenzaModel.treatFractLabel=Behandelter Anteil [%] InfluenzaModel.beginOnDayLabel=Beginn an Tag InfluenzaModel.endOnDayLabel=Ende an Tag InfluenzaModel.treatEfficacyInfectiousnessLabel=Reduktion der Infektiositt um [%] InfluenzaModel.infDurReductionLabel=Reduktion der Erkrankungsdauer um [%] InfluenzaModel.treatHospPrevLabel=Reduktion der Hospitalisierungen um [%] InfluenzaModel.socialDistancingTab=Kontaktvermeidung InfluenzaModel.partialIsolationGroup=Teilweise Isolation InfluenzaModel.generalReductionGroup=Allgemeinte Kontaktvermeidung InfluenzaModel.dayCareGroup=Schlieung von Kindergrten und Schulen InfluenzaModel.massGatheringGroup=Absagen von Massenveranstaltungen InfluenzaModel.isolationModeratelyLabel=Moderat Erkrankte [%] InfluenzaModel.isolationHomeLabel=Schwer Erkrankte (zu Hause) [%] InfluenzaModel.isolationHospitalLabel=Schwer Erkrankte (Krankenhaus) [%] InfluenzaModel.generalReductionFractionLabel=Kontaktreduktion um [%] InfluenzaModel.schoolContactsFractionLabel=Kind-Kind-Kontakte in der Schule [%] InfluenzaModel.reDistributeLabel=Umverteilung der Kontakte [%] InfluenzaModel.eventCancelingFractionLabel=Kontaktreduktion um [%] PK 4R|/de/explosys/influenza/model/messages.propertiesInfluenzaModel.individualsUnit=Individuals InfluenzaModel.euroUnit=\u20AC x 1000 InfluenzaModel.infectionView=Infection InfluenzaModel.ressourceView=Ressource Use InfluenzaModel.cumulativeView=Cumulative InfluenzaModel.costsView=Costs[k\u20AC] InfluenzaModel.susceptibleGraph=Susceptible InfluenzaModel.exposedGraph=Exposed InfluenzaModel.asymptomaticGraph=Asymptomatic InfluenzaModel.moderateGraph=Moderate InfluenzaModel.severeGraph=Severe InfluenzaModel.deadGraph=Dead InfluenzaModel.immuneGraph=Immune InfluenzaModel.workLossGraph=Work Loss InfluenzaModel.workLossWeekGraph=Work Loss [wk] InfluenzaModel.outpatientsGraph=Outpatients InfluenzaModel.hospitalBedsGraph=Hospital beds InfluenzaModel.hospitalisationsGraph=Hospitalisations InfluenzaModel.hospitalizedGraph=Hospitalized InfluenzaModel.antiviralsGraph=Antivirals InfluenzaModel.totalGraph=Total InfluenzaModel.generalSettingsTab=General settings InfluenzaModel.ageDistributionGroup=Age distribution InfluenzaModel.contactMatrixGroup=Contact matrix InfluenzaModel.costsGroup=Costs InfluenzaModel.individualsLabel=Number of individuals InfluenzaModel.ageRisksLabel=High risk fraction [%] InfluenzaModel.childrenMixLabel=From children to InfluenzaModel.workingMixLabel=From working to InfluenzaModel.elderlyMixLabel=From elderly to InfluenzaModel.weeklyWorkCostLabel=\u20AC / week of work loss InfluenzaModel.outpatientCostLabel=\u20AC / outpatient InfluenzaModel.hospitalisationCostLabel=\u20AC / hospitalisation InfluenzaModel.antiviralTreatmentCostLabel=\u20AC / antiviral treatment InfluenzaModel.childrenName=children: InfluenzaModel.workingName=working: InfluenzaModel.elderlyName=elderly: InfluenzaModel.diseaseTab=Disease InfluenzaModel.averageDurationsGroup=Average durations InfluenzaModel.diseaseSeverityGroup=Disease severity InfluenzaModel.hospitalizedCasesGroup=Fraction of hospitalized cases among untreated severe cases InfluenzaModel.caseFatalityGroup=Case fatality InfluenzaModel.allAgesName=all ages: InfluenzaModel.expDurLabel=Latent stage [d] InfluenzaModel.infDurMildLabel=Asymptomatic and moderate disease [d] InfluenzaModel.infDurSevereLabel=Severe disease [d] InfluenzaModel.recDurLabel=\ Reconvalescence [d] InfluenzaModel.asymptomaticFractionLabel=Asymptomatic cases [%] InfluenzaModel.severeFractionLabel=Severe cases among symptomatic [%] InfluenzaModel.hospitalLowLabel=Low risk group [%] InfluenzaModel.hospitalHighLabel=High risk group [%] InfluenzaModel.deadFractionUntreatedLabel=Percentage of untreated extremely severe cases InfluenzaModel.contagiousnessTab=Contagiousness InfluenzaModel.basicReproductionNumberGroup=Basic reproduction number InfluenzaModel.contagiousnessGroup=Contagiousness during first half of infectious period InfluenzaModel.relativeContagiousnessGroup=Relative contagiousness compared to moderately sick cases InfluenzaModel.r0Label=R0 InfluenzaModel.halfInfectosityLabel=Fraction [%] InfluenzaModel.eInfFactLabel=Prodromal period [%] InfluenzaModel.infFactAsymptomaticLabel=Asymptomatic cases [%] InfluenzaModel.infFactSevereLabel=Severe cases [%] InfluenzaModel.treatmentTab=Treatment InfluenzaModel.ressourcesGroup=Ressources InfluenzaModel.scheduleGroup=Medical time schedule (averages) InfluenzaModel.treatmentOfSevereCasesGroup=Treatment of severe cases InfluenzaModel.treatmentOfExtremelySickCasesGroup=Treatment of extremely sick cases InfluenzaModel.treatmentEffectsGroup=Treatment effects InfluenzaModel.antiviralRessourceLabel=Antivirals availability [%] InfluenzaModel.consultationDelayLabel=Seeking of medical help [h after onset] InfluenzaModel.maxTreatmentDelayLabel=Treatment possible until [h after onset] InfluenzaModel.treatFractLabel=Treamtent fraction [%] InfluenzaModel.beginOnDayLabel=Begin on day InfluenzaModel.endOnDayLabel=End on day InfluenzaModel.treatEfficacyInfectiousnessLabel=Reduction of contagiousness by [%] InfluenzaModel.infDurReductionLabel=Reduction of disease duration by [%] InfluenzaModel.treatHospPrevLabel=Reduction of hospitalisation by [%] InfluenzaModel.socialDistancingTab=Social distancing InfluenzaModel.partialIsolationGroup=Partial isolation InfluenzaModel.generalReductionGroup=General reduction of contacts InfluenzaModel.dayCareGroup=Closing of day care centers and schools InfluenzaModel.massGatheringGroup=Cancelling of mass gathering events InfluenzaModel.isolationModeratelyLabel=Moderately sick cases [%] InfluenzaModel.isolationHomeLabel=Severe cases (home) [%] InfluenzaModel.isolationHospitalLabel=Severe cases (hospital) [%] InfluenzaModel.generalReductionFractionLabel=Contact reduction by [%] InfluenzaModel.schoolContactsFractionLabel=Child-child contacts at school [%] InfluenzaModel.reDistributeLabel=Re-distribution of contacts [%] InfluenzaModel.eventCancelingFractionLabel=Contact reduction by [%] PK Qy?4σ@@ .classpath PK y?4 .project de.explosys.influenza.epidynet org.eclipse.jdt.core.javabuilder org.eclipse.jdt.core.javanature PK ph4G*.settings/org.eclipse.core.resources.prefs#Wed May 17 13:03:33 CEST 2006 eclipse.preferences.version=1 encoding//de/explosys/influenza/model/messages.properties=8859_1 PK ss 5|jj$.settings/org.eclipse.jdt.core.prefs#Wed Aug 09 14:27:38 CEST 2006 eclipse.preferences.version=1 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.2 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve org.eclipse.jdt.core.compiler.compliance=1.4 org.eclipse.jdt.core.compiler.debug.lineNumber=generate org.eclipse.jdt.core.compiler.debug.localVariable=generate org.eclipse.jdt.core.compiler.debug.sourceFile=generate org.eclipse.jdt.core.compiler.problem.annotationSuperInterface=warning org.eclipse.jdt.core.compiler.problem.assertIdentifier=warning org.eclipse.jdt.core.compiler.problem.autoboxing=ignore org.eclipse.jdt.core.compiler.problem.deprecation=warning org.eclipse.jdt.core.compiler.problem.deprecationInDeprecatedCode=disabled org.eclipse.jdt.core.compiler.problem.deprecationWhenOverridingDeprecatedMethod=disabled org.eclipse.jdt.core.compiler.problem.discouragedReference=warning org.eclipse.jdt.core.compiler.problem.emptyStatement=warning 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Feb 10 19:06:21 CET 2006 eclipse.preferences.version=1 internal.default.compliance=default PK c\4EёP P Balanced.epi PK nyt4} Default.epi PK 0xv4nhB B Equal.epi PK u4}b5 5 KantonZürich.epi PK \^ 5;]lwinflusim.jardesc PK '~C45java.hprof.txtJAVA PROFILE 1.0.1, created Fri Feb 03 15:41:22 2006 Header for -agentlib:hprof (or -Xrunhprof) ASCII Output (J2SE 1.5 JVMTI based) @(#)jvm.hprof.txt 1.3 04/02/09 Copyright (c) 2004 Sun Microsystems, Inc. All Rights Reserved. WARNING! This file format is under development, and is subject to change without notice. This file contains the following types of records: THREAD START THREAD END mark the lifetime of Java threads TRACE represents a Java stack trace. Each trace consists of a series of stack frames. Other records refer to TRACEs to identify (1) where object allocations have taken place, (2) the frames in which GC roots were found, and (3) frequently executed methods. HEAP DUMP is a complete snapshot of all live objects in the Java heap. Following distinctions are made: ROOT root set as determined by GC CLS classes OBJ instances ARR arrays SITES is a sorted list of allocation sites. This identifies the most heavily allocated object types, and the TRACE at which those allocations occurred. CPU SAMPLES is a statistical profile of program execution. The VM periodically samples all running threads, and assigns a quantum to active TRACEs in those threads. Entries in this record are TRACEs ranked by the percentage of total quanta they consumed; top-ranked TRACEs are typically hot spots in the program. CPU TIME is a profile of program execution obtained by measuring the time spent in individual methods (excluding the time spent in callees), as well as by counting the number of times each method is called. Entries in this record are TRACEs ranked by the percentage of total CPU time. The "count" field indicates the number of times each TRACE is invoked. MONITOR TIME is a profile of monitor contention obtained by measuring the time spent by a thread waiting to enter a monitor. Entries in this record are TRACEs ranked by the percentage of total monitor contention time and a brief description of the monitor. The "count" field indicates the number of times the monitor was contended at that TRACE. MONITOR DUMP is a complete snapshot of all the monitors and threads in the System. HEAP DUMP, SITES, CPU SAMPLES|TIME and MONITOR DUMP|TIME records are generated at program exit. They can also be obtained during program execution by typing Ctrl-\ (on Solaris) or by typing Ctrl-Break (on Win32). -------- THREAD START (obj=50000113, id = 200003, name="Signal Dispatcher", group="system") THREAD START (obj=50000113, id = 200000, name="main", group="main") THREAD START (obj=50000113, id = 200004, name="AWT-Shutdown", group="main") THREAD START (obj=50000113, id = 200005, name="AWT-Windows", group="main") THREAD START (obj=50000113, id = 200006, name="Image Fetcher 0", group="main") THREAD START (obj=50000113, id = 200009, name="Image Fetcher 1", group="main") THREAD START (obj=50000113, id = 200010, name="Java2D Disposer", group="main") THREAD START (obj=5000036e, id = 200011, name="AWT-EventQueue-0", group="main") THREAD START (obj=5000036e, id = 200012, name="Thread-2", group="main") THREAD START (obj=50000113, id = 200013, name="Thread-3", group="main") THREAD END (id = 200000) THREAD START (obj=50000113, id = 200014, name="DestroyJavaVM", group="main") THREAD START (obj=50000113, id = 200015, name="TimerQueue", group="main") THREAD END (id = 200006) THREAD END (id = 200009) THREAD START (obj=50000113, id = 200016, name="Thread-1", group="system") THREAD END (id = 200005) THREAD END (id = 200016) THREAD START (obj=50000113, id = 200017, name="Thread-0", group="main") THREAD END (id = 200017) THREAD END (id = 200011) THREAD END (id = 200001) TRACE 300197: sun.awt.windows.WToolkit.eventLoop(:Unknown line) sun.awt.windows.WToolkit.run(:Unknown line) java.lang.Thread.run(:Unknown line) TRACE 300959: sun.awt.windows.WGlobalCursorManager.findHeavyweightUnderCursor(:Unknown line) sun.awt.GlobalCursorManager._updateCursor(:Unknown line) sun.awt.GlobalCursorManager.updateCursorImmediately(:Unknown line) sun.awt.windows.WComponentPeer.updateCursorImmediately(:Unknown line) TRACE 301031: javax.swing.SystemEventQueueUtilities.queueComponentWorkRequest(:Unknown line) javax.swing.RepaintManager.addDirtyRegion(:Unknown line) javax.swing.JComponent.repaint(:Unknown line) java.awt.Component.repaint(:Unknown line) TRACE 301048: sun.dc.pr.PathFiller.setOutputArea(:Unknown line) sun.dc.pr.Rasterizer.setOutputArea(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.renderPath(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.draw(:Unknown line) CPU SAMPLES BEGIN (total = 207986) Fri Feb 03 15:49:15 2006 rank self accum count trace method 1 99.82% 99.82% 207615 300197 sun.awt.windows.WToolkit.eventLoop 2 0.01% 99.84% 29 300959 sun.awt.windows.WGlobalCursorManager.findHeavyweightUnderCursor 3 0.01% 99.85% 24 301031 javax.swing.SystemEventQueueUtilities.queueComponentWorkRequest 4 0.01% 99.86% 21 301048 sun.dc.pr.PathFiller.setOutputArea CPU SAMPLES END ine) java.io.RandomAccessFile.(:Unknown line) sun.font.TrueTypeFont$1.run(:Unknown line) TRACE 301020: de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:179) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) de.explosys.influenza.epidynet.models.AbstractModel.simulate(AbstractModel.java:133) TRACE 300547: java.io.FileInputStream.open(:Unknown line) java.io.FileInputStream.(:Unknown line) sun.misc.URLClassPath$FileLoader$1.getInputStream(:Unknown line) sun.misc.Resource.cachedInputStream(:Unknown line) TRACE 301028: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:743) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:213) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301023: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:743) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:162) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301025: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:659) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:170) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301031: java.lang.Thread.yield(:Unknown line) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:410) de.explosys.influenza.epidynet.models.AbstractModel.simulate(AbstractModel.java:133) de.explosys.influenza.epidynet.models.AbstractModel$ModelDaemon.run(AbstractModel.java:100) TRACE 301032: sun.java2d.loops.MaskFill.MaskFill(:Unknown line) sun.java2d.pipe.AlphaColorPipe.renderPathTile(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.renderPath(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.draw(:Unknown line) TRACE 300039: java.lang.ClassLoader.findBootstrapClass(:Unknown line) java.lang.ClassLoader.findBootstrapClass0(:Unknown line) java.lang.ClassLoader.loadClass(:Unknown line) java.lang.ClassLoader.loadClass(:Unknown line) TRACE 300278: java.awt.MediaTracker.setDone(:Unknown line) java.awt.MediaEntry.setStatus(:Unknown line) java.awt.ImageMediaEntry.imageUpdate(:Unknown line) sun.awt.image.ImageWatched$WeakLink.newInfo(:Unknown line) TRACE 301053: sun.dc.pr.PathFiller.setOutputArea(:Unknown line) sun.dc.pr.Rasterizer.setOutputArea(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.renderPath(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.fill(:Unknown line) TRACE 300536: sun.awt.windows.ThemeReader.getBitmapResource(:Unknown line) sun.awt.windows.ThemeReader.access$600(:Unknown line) sun.awt.windows.ThemeReader$ImageResources.get(:Unknown line) com.sun.java.swing.plaf.windows.XPStyle.getBitmapResource(:Unknown line) TRACE 301059: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:844) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:162) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301024: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:659) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:162) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301049: sun.awt.windows.WGlobalCursorManager.setCursor(:Unknown line) sun.awt.GlobalCursorManager._updateCursor(:Unknown line) sun.awt.GlobalCursorManager.updateCursorImmediately(:Unknown line) sun.awt.windows.WComponentPeer.updateCursorImmediately(:Unknown line) TRACE 301048: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:659) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:154) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301029: de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:219) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) de.explosys.influenza.epidynet.models.AbstractModel.simulate(AbstractModel.java:133) TRACE 301046: sun.java2d.loops.MaskFill.MaskFill(:Unknown line) sun.java2d.pipe.AlphaColorPipe.renderPathTile(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.renderPath(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.fill(:Unknown line) TRACE 301054: sun.dc.pr.PathFiller.writeAlpha8(:Unknown line) sun.dc.pr.PathFiller.writeAlpha(:Unknown line) sun.dc.pr.Rasterizer.writeAlpha(:Unknown line) sun.java2d.pipe.DuctusRenderer.getAlpha(:Unknown line) TRACE 301043: sun.awt.windows.Win32DDRenderer.doFillRectDD(:Unknown line) sun.awt.windows.Win32DDRenderer.fillRect(:Unknown line) sun.java2d.SunGraphics2D.fillRect(:Unknown line) javax.swing.plaf.basic.BasicTextUI.paintBackground(:Unknown line) TRACE 301038: java.awt.AWTEvent.dispatched(:Unknown line) java.awt.EventQueue.dispatchEvent(:Unknown line) java.awt.EventDispatchThread.pumpOneEventForHierarchy(:Unknown line) java.awt.EventDispatchThread.pumpEventsForHierarchy(:Unknown line) TRACE 301045: sun.awt.windows.WGlobalCursorManager.findHeavyweightUnderCursor(:Unknown line) sun.awt.GlobalCursorManager._updateCursor(:Unknown line) sun.awt.GlobalCursorManager.access$000(:Unknown line) sun.awt.GlobalCursorManager$NativeUpdater.run(:Unknown line) TRACE 301055: sun.java2d.SunGraphics2D.dispose(:Unknown line) javax.swing.JComponent.paint(:Unknown line) javax.swing.CellRendererPane.paintComponent(:Unknown line) javax.swing.plaf.basic.BasicTableUI.paintCell(:Unknown line) TRACE 301056: de.explosys.influenza.epidynet.gui.EpiSimGraph.paint(EpiSimGraph.java:246) javax.swing.JComponent.paintChildren(:Unknown line) javax.swing.JComponent.paint(:Unknown line) javax.swing.JComponent.paintWithOffscreenBuffer(:Unknown line) TRACE 301030: java.awt.Rectangle.translate(:Unknown line) sun.java2d.SunGraphics2D.transformShape(:Unknown line) sun.java2d.SunGraphics2D.transformShape(:Unknown line) sun.java2d.SunGraphics2D.clip(:Unknown line) TRACE 301047: sun.dc.pr.PathFiller.appendLine(:Unknown line) sun.dc.pr.Rasterizer.appendLine(:Unknown line) sun.java2d.pipe.DuctusRenderer.createShapeRasterizer(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.renderPath(:Unknown line) TRACE 301057: com.sun.java.swing.plaf.windows.WindowsTabbedPaneUI.setRolloverTab(:Unknown line) javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.layoutContainer(:Unknown line) java.awt.Container.layout(:Unknown line) java.awt.Container.doLayout(:Unknown line) TRACE 301027: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:832) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:170) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301026: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:743) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:170) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301058: sun.java2d.loops.Blit.Blit(:Unknown line) sun.java2d.pipe.DrawImage.blitSurfaceData(:Unknown line) sun.java2d.pipe.DrawImage.renderImageCopy(:Unknown line) sun.java2d.pipe.DrawImage.copyImage(:Unknown line) TRACE 301050: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:832) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:154) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301051: sun.awt.windows.Win32BlitLoops.Blit(:Unknown line) sun.java2d.pipe.DrawImage.blitSurfaceData(:Unknown line) sun.java2d.pipe.DrawImage.renderImageCopy(:Unknown line) sun.java2d.pipe.DrawImage.copyImage(:Unknown line) TRACE 301022: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:659) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:213) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301060: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:824) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:154) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301052: sun.java2d.SunGraphics2D.drawLine(:Unknown line) javax.swing.plaf.basic.BasicTableUI.paintGrid(:Unknown line) javax.swing.plaf.basic.BasicTableUI.paint(:Unknown line) javax.swing.plaf.ComponentUI.update(:Unknown line) TRACE 300040: java.lang.ClassLoader.defineClass1(:Unknown line) java.lang.ClassLoader.defineClass(:Unknown line) java.security.SecureClassLoader.defineClass(:Unknown line) java.net.URLClassLoader.defineClass(:Unknown line) TRACE 301062: sun.java2d.SunGraphics2D.intersectShapes(:Unknown line) sun.java2d.SunGraphics2D.clip(:Unknown line) sun.java2d.SunGraphics2D.clipRect(:Unknown line) java.awt.Graphics.create(:Unknown line) TRACE 301019: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:628) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:170) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301018: de.explosys.influenza.model.InfluenzaDgl.computeR0(InfluenzaDgl.java:554) de.explosys.influenza.model.InfluenzaDgl$1.eval(InfluenzaDgl.java:519) de.explosys.influenza.model.InfluenzaDgl$Root.find(InfluenzaDgl.java:991) de.explosys.influenza.model.InfluenzaDgl$Root.find(InfluenzaDgl.java:995) TRACE 301017: Jama.EigenvalueDecomposition.orthes(EigenvalueDecomposition.java:315) Jama.EigenvalueDecomposition.(EigenvalueDecomposition.java:900) Jama.Matrix.eig(Matrix.java:806) de.explosys.influenza.model.InfluenzaDgl.computeR0(InfluenzaDgl.java:577) TRACE 300996: java.util.jar.Manifest$FastInputStream.(:Unknown line) java.util.jar.Manifest$FastInputStream.(:Unknown line) java.util.jar.Manifest.read(:Unknown line) java.util.jar.Manifest.(:Unknown line) TRACE 300972: sun.awt.windows.Win32OffScreenSurfaceData.initSurface(:Unknown line) sun.awt.windows.Win32OffScreenSurfaceData.(:Unknown line) sun.awt.windows.Win32OffScreenSurfaceData.createData(:Unknown line) sun.awt.windows.WinCachingSurfaceManager.initAcceleratedSurface(:Unknown line) TRACE 300959: sun.awt.windows.WInputMethod.createNativeContext(:Unknown line) sun.awt.windows.WInputMethod.(:Unknown line) sun.awt.windows.WInputMethodDescriptor.createInputMethod(:Unknown line) sun.awt.im.InputContext.getInputMethodInstance(:Unknown line) TRACE 300952: sun.awt.windows.WComponentPeer.pShow(:Unknown line) sun.awt.windows.WComponentPeer.show(:Unknown line) sun.awt.windows.WWindowPeer.show(:Unknown line) java.awt.Component.show(:Unknown line) TRACE 301063: java.lang.Object.notifyAll(:Unknown line) java.awt.EventQueue.wakeup(:Unknown line) sun.reflect.GeneratedMethodAccessor8.invoke(:Unknown line) sun.reflect.DelegatingMethodAccessorImpl.invoke(:Unknown line) TRACE 300931: sun.awt.windows.WFramePeer.createAwtFrame(:Unknown line) sun.awt.windows.WFramePeer.create(:Unknown line) sun.awt.windows.WComponentPeer.(:Unknown line) sun.awt.windows.WCanvasPeer.(:Unknown line) TRACE 300926: javax.swing.text.AbstractDocument$AbstractElement.checkForIllegalCast(:Unknown line) javax.swing.text.AbstractDocument$AbstractElement.addAttributes(:Unknown line) javax.swing.text.AbstractDocument$AbstractElement.(:Unknown line) javax.swing.text.AbstractDocument$LeafElement.(:Unknown line) TRACE 300922: com.sun.java.swing.plaf.windows.XPStyle.convertToTransparent(:Unknown line) com.sun.java.swing.plaf.windows.XPStyle.getImage(:Unknown line) com.sun.java.swing.plaf.windows.XPStyle.access$200(:Unknown line) com.sun.java.swing.plaf.windows.XPStyle$Skin.getScaledImage(:Unknown line) TRACE 300914: java.beans.PropertyChangeSupport.addPropertyChangeListener(:Unknown line) java.awt.Component.addPropertyChangeListener(:Unknown line) java.awt.Container.addPropertyChangeListener(:Unknown line) javax.swing.plaf.basic.BasicScrollPaneUI.installListeners(:Unknown line) TRACE 300873: java.awt.image.DirectColorModel.getRGB(:Unknown line) java.awt.image.DirectColorModel.getRGB(:Unknown line) java.awt.image.BufferedImage.getRGB(:Unknown line) com.sun.java.swing.plaf.windows.XPStyle.convertToTransparent(:Unknown line) TRACE 300838: java.lang.Class.getDeclaredMethods0(:Unknown line) java.lang.Class.privateGetDeclaredMethods(:Unknown line) java.lang.Class.getMethod0(:Unknown line) java.lang.Class.getMethod(:Unknown line) TRACE 300698: sun.awt.image.InputStreamImageSource.startProduction(:Unknown line) sun.awt.image.ImageRepresentation.startProduction(:Unknown line) sun.awt.image.ImageRepresentation.prepare(:Unknown line) sun.awt.SunToolkit.prepareImage(:Unknown line) TRACE 300623: java.lang.String.substring(:Unknown line) java.awt.datatransfer.MimeType.parse(:Unknown line) java.awt.datatransfer.MimeType.(:Unknown line) java.awt.datatransfer.DataFlavor.initialize(:Unknown line) TRACE 300594: java.nio.channels.spi.AbstractInterruptibleChannel.blockedOn(:Unknown line) java.nio.channels.spi.AbstractInterruptibleChannel.begin(:Unknown line) sun.nio.ch.FileChannelImpl.read(:Unknown line) sun.font.TrueTypeFont.readBlock(:Unknown line) TRACE 301064: java.awt.geom.GeneralPath.needRoom(:Unknown line) java.awt.geom.GeneralPath.lineTo(:Unknown line) sun.java2d.pipe.PixelToShapeConverter.makePoly(:Unknown line) sun.java2d.pipe.PixelToShapeConverter.fillPolygon(:Unknown line) TRACE 301065: java.awt.geom.GeneralPath.moveTo(:Unknown line) java.awt.geom.GeneralPath.append(:Unknown line) sun.awt.windows.Win32Renderer.doShape(:Unknown line) sun.awt.windows.Win32Renderer.draw(:Unknown line) TRACE 300061: java.lang.ClassLoader$NativeLibrary.load(:Unknown line) java.lang.ClassLoader.loadLibrary0(:Unknown line) java.lang.ClassLoader.loadLibrary(:Unknown line) java.lang.Runtime.loadLibrary0(:Unknown line) TRACE 301061: de.explosys.influenza.model.InfluenzaDgl.eval(InfluenzaDgl.java:859) de.explosys.influenza.model.RungeKutta2.step(RungeKutta2.java:162) de.explosys.influenza.model.RungeKutta2.run(RungeKutta2.java:263) de.explosys.influenza.model.InfluenzaModel.simulate(InfluenzaModel.java:269) TRACE 301068: sun.awt.windows.WComponentPeer.hide(:Unknown line) java.awt.Component.hide(:Unknown line) java.awt.Window.hide(:Unknown line) java.awt.Component.show(:Unknown line) TRACE 300532: sun.awt.windows.ThemeReader.getTextResourceByInt(:Unknown line) sun.awt.windows.ThemeReader.access$400(:Unknown line) sun.awt.windows.ThemeReader$TextResources.(:Unknown line) sun.awt.windows.ThemeReader.loadResources(:Unknown line) TRACE 300415: javax.swing.SystemEventQueueUtilities.addRunnableCanvas(:Unknown line) javax.swing.JRootPane.addNotify(:Unknown line) java.awt.Container.addNotify(:Unknown line) java.awt.Window.addNotify(:Unknown line) TRACE 300390: sun.awt.windows.WComponentPeer.setFont(:Unknown line) sun.awt.windows.WWindowPeer.initialize(:Unknown line) sun.awt.windows.WFramePeer.initialize(:Unknown line) sun.awt.windows.WComponentPeer.(:Unknown line) TRACE 300307: java.awt.MediaEntry.setStatus(:Unknown line) java.awt.ImageMediaEntry.imageUpdate(:Unknown line) sun.awt.image.ImageWatched$WeakLink.newInfo(:Unknown line) sun.awt.image.ImageWatched.newInfo(:Unknown line) TRACE 300306: sun.awt.windows.WDesktopProperties.init(:Unknown line) sun.awt.windows.WDesktopProperties.(:Unknown line) sun.awt.windows.WToolkit.initializeDesktopProperties(:Unknown line) java.awt.Toolkit.getDesktopProperty(:Unknown line) TRACE 301066: sun.dc.pr.PathStroker.appendLine(:Unknown line) sun.dc.pr.Rasterizer.appendLine(:Unknown line) sun.java2d.pipe.DuctusRenderer.createShapeRasterizer(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.renderPath(:Unknown line) TRACE 300277: sun.font.CompositeFont.(:Unknown line) sun.font.FontManager.registerCompositeFont(:Unknown line) sun.java2d.SunGraphicsEnvironment.initCompositeFonts(:Unknown line) sun.java2d.SunGraphicsEnvironment.access$400(:Unknown line) TRACE 300247: sun.awt.image.JPEGImageDecoder.readImage(:Unknown line) sun.awt.image.JPEGImageDecoder.produceImage(:Unknown line) sun.awt.image.InputStreamImageSource.doFetch(:Unknown line) sun.awt.image.ImageFetcher.fetchloop(:Unknown line) TRACE 300245: java.awt.image.Raster.createPackedRaster(:Unknown line) java.awt.image.Raster.createPackedRaster(:Unknown line) java.awt.image.DirectColorModel.createCompatibleWritableRaster(:Unknown line) sun.awt.image.ImageRepresentation.createBufferedImage(:Unknown line) TRACE 300242: java.awt.image.DataBufferInt.(:Unknown line) java.awt.image.Raster.createPackedRaster(:Unknown line) java.awt.image.DirectColorModel.createCompatibleWritableRaster(:Unknown line) sun.awt.image.ImageRepresentation.createBufferedImage(:Unknown line) TRACE 300239: java.lang.Thread.setPriority0(:Unknown line) java.lang.Thread.setPriority(:Unknown line) sun.awt.image.ImageDecoder.headerComplete(:Unknown line) sun.awt.image.JPEGImageDecoder.sendHeaderInfo(:Unknown line) TRACE 301067: java.awt.geom.AffineTransform.transform(:Unknown line) java.awt.geom.GeneralPathIterator.currentSegment(:Unknown line) sun.java2d.pipe.DuctusRenderer.createShapeRasterizer(:Unknown line) sun.java2d.pipe.DuctusShapeRenderer.renderPath(:Unknown line) TRACE 300144: sun.java2d.SurfaceData.(:Unknown line) sun.awt.windows.WToolkit.initIDs(:Unknown line) sun.awt.windows.WToolkit.(:Unknown line) java.lang.Class.forName0(:Unknown line) TRACE 301069: java.lang.Shutdown.halt0(:Unknown line) java.lang.Shutdown.halt(:Unknown line) java.lang.Shutdown.exit(:Unknown line) java.lang.Runtime.exit(:Unknown line) CPU SAMPLES BEGIN (total = 748) Fri Feb 03 15:41:37 2006 rank self accum count trace method 1 82.22% 82.22% 615 300195 sun.awt.windows.WToolkit.eventLoop 2 0.94% 83.16% 7 300102 sun.awt.Win32GraphicsEnvironment.initDisplay 3 0.80% 83.96% 6 301021 javax.swing.SystemEventQueueUtilities.queueComponentWorkRequest 4 0.80% 84.76% 6 301033 sun.dc.pr.PathFiller.setOutputArea 5 0.80% 85.56% 6 300947 sun.awt.windows.WGlobalCursorManager.findHeavyweightUnderCursor 6 0.53% 86.10% 4 300593 java.io.RandomAccessFile.open 7 0.53% 86.63% 4 301020 de.explosys.influenza.model.RungeKutta2.step 8 0.53% 87.17% 4 300547 java.io.FileInputStream.open 9 0.53% 87.70% 4 301028 de.explosys.influenza.model.InfluenzaDgl.eval 10 0.53% 88.24% 4 301023 de.explosys.influenza.model.InfluenzaDgl.eval 11 0.53% 88.77% 4 301025 de.explosys.influenza.model.InfluenzaDgl.eval 12 0.40% 89.17% 3 301031 java.lang.Thread.yield 13 0.40% 89.57% 3 301032 sun.java2d.loops.MaskFill.MaskFill 14 0.40% 89.97% 3 300039 java.lang.ClassLoader.findBootstrapClass 15 0.40% 90.37% 3 300278 java.awt.MediaTracker.setDone 16 0.27% 90.64% 2 301053 sun.dc.pr.PathFiller.setOutputArea 17 0.27% 90.91% 2 300536 sun.awt.windows.ThemeReader.getBitmapResource 18 0.27% 91.18% 2 301059 de.explosys.influenza.model.InfluenzaDgl.eval 19 0.27% 91.44% 2 301024 de.explosys.influenza.model.InfluenzaDgl.eval 20 0.27% 91.71% 2 301049 sun.awt.windows.WGlobalCursorManager.setCursor 21 0.27% 91.98% 2 301048 de.explosys.influenza.model.InfluenzaDgl.eval 22 0.27% 92.25% 2 301029 de.explosys.influenza.model.RungeKutta2.step 23 0.27% 92.51% 2 301046 sun.java2d.loops.MaskFill.MaskFill 24 0.27% 92.78% 2 301054 sun.dc.pr.PathFiller.writeAlpha8 25 0.13% 92.91% 1 301043 sun.awt.windows.Win32DDRenderer.doFillRectDD 26 0.13% 93.05% 1 301038 java.awt.AWTEvent.dispatched 27 0.13% 93.18% 1 301045 sun.awt.windows.WGlobalCursorManager.findHeavyweightUnderCursor 28 0.13% 93.32% 1 301055 sun.java2d.SunGraphics2D.dispose 29 0.13% 93.45% 1 301056 de.explosys.influenza.epidynet.gui.EpiSimGraph.paint 30 0.13% 93.58% 1 301030 java.awt.Rectangle.translate 31 0.13% 93.72% 1 301047 sun.dc.pr.PathFiller.appendLine 32 0.13% 93.85% 1 301057 com.sun.java.swing.plaf.windows.WindowsTabbedPaneUI.setRolloverTab 33 0.13% 93.98% 1 301027 de.explosys.influenza.model.InfluenzaDgl.eval 34 0.13% 94.12% 1 301026 de.explosys.influenza.model.InfluenzaDgl.eval 35 0.13% 94.25% 1 301058 sun.java2d.loops.Blit.Blit 36 0.13% 94.39% 1 301050 de.explosys.influenza.model.InfluenzaDgl.eval 37 0.13% 94.52% 1 301051 sun.awt.windows.Win32BlitLoops.Blit 38 0.13% 94.65% 1 301022 de.explosys.influenza.model.InfluenzaDgl.eval 39 0.13% 94.79% 1 301060 de.explosys.influenza.model.InfluenzaDgl.eval 40 0.13% 94.92% 1 301052 sun.java2d.SunGraphics2D.drawLine 41 0.13% 95.05% 1 300040 java.lang.ClassLoader.defineClass1 42 0.13% 95.19% 1 301062 sun.java2d.SunGraphics2D.intersectShapes 43 0.13% 95.32% 1 301019 de.explosys.influenza.model.InfluenzaDgl.eval 44 0.13% 95.45% 1 301018 de.explosys.influenza.model.InfluenzaDgl.computeR0 45 0.13% 95.59% 1 301017 Jama.EigenvalueDecomposition.orthes 46 0.13% 95.72% 1 300996 java.util.jar.Manifest$FastInputStream. 47 0.13% 95.86% 1 300972 sun.awt.windows.Win32OffScreenSurfaceData.initSurface 48 0.13% 95.99% 1 300959 sun.awt.windows.WInputMethod.createNativeContext 49 0.13% 96.12% 1 300952 sun.awt.windows.WComponentPeer.pShow 50 0.13% 96.26% 1 301063 java.lang.Object.notifyAll 51 0.13% 96.39% 1 300931 sun.awt.windows.WFramePeer.createAwtFrame 52 0.13% 96.52% 1 300926 javax.swing.text.AbstractDocument$AbstractElement.checkForIllegalCast 53 0.13% 96.66% 1 300922 com.sun.java.swing.plaf.windows.XPStyle.convertToTransparent 54 0.13% 96.79% 1 300914 java.beans.PropertyChangeSupport.addPropertyChangeListener 55 0.13% 96.93% 1 300873 java.awt.image.DirectColorModel.getRGB 56 0.13% 97.06% 1 300838 java.lang.Class.getDeclaredMethods0 57 0.13% 97.19% 1 300698 sun.awt.image.InputStreamImageSource.startProduction 58 0.13% 97.33% 1 300623 java.lang.String.substring 59 0.13% 97.46% 1 300594 java.nio.channels.spi.AbstractInterruptibleChannel.blockedOn 60 0.13% 97.59% 1 301064 java.awt.geom.GeneralPath.needRoom 61 0.13% 97.73% 1 301065 java.awt.geom.GeneralPath.moveTo 62 0.13% 97.86% 1 300061 java.lang.ClassLoader$NativeLibrary.load 63 0.13% 97.99% 1 301061 de.explosys.influenza.model.InfluenzaDgl.eval 64 0.13% 98.13% 1 301068 sun.awt.windows.WComponentPeer.hide 65 0.13% 98.26% 1 300532 sun.awt.windows.ThemeReader.getTextResourceByInt 66 0.13% 98.40% 1 300415 javax.swing.SystemEventQueueUtilities.addRunnableCanvas 67 0.13% 98.53% 1 300390 sun.awt.windows.WComponentPeer.setFont 68 0.13% 98.66% 1 300307 java.awt.MediaEntry.setStatus 69 0.13% 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LineNumberTableLocalVariableTablethis,Lde/explosys/influenza/model/InfluenzaDgl$1;eval(D)D(de/explosys/influenza/model/InfluenzaDgl computeF50  muD SourceFileInfluenzaDgl.java InnerClasses0  8 * *+ $   = *'&   PK s 5J0de/explosys/influenza/model/InfluenzaDgl$2.class. *de/explosys/influenza/model/InfluenzaDgl$2-de/explosys/influenza/model/InfluenzaDgl$Rootthis$0*Lde/explosys/influenza/model/InfluenzaDgl; Synthetic-(Lde/explosys/influenza/model/InfluenzaDgl;)VCode()V    LineNumberTableLocalVariableTablethis,Lde/explosys/influenza/model/InfluenzaDgl$2;eval(D)D(de/explosys/influenza/model/InfluenzaDgl computeR0  xD SourceFileInfluenzaDgl.java InnerClasses0  8 * *+ L   = *'N   PK s 5͛"""0de/explosys/influenza/model/InfluenzaDgl$3.class.'*de/explosys/influenza/model/InfluenzaDgl$3-de/explosys/influenza/model/InfluenzaDgl$Rootthis$0*Lde/explosys/influenza/model/InfluenzaDgl; Syntheticval$gamDval$dead/(Lde/explosys/influenza/model/InfluenzaDgl;DD)VCode()V       LineNumberTableLocalVariableTablethis,Lde/explosys/influenza/model/InfluenzaDgl$3;eval(D)D(de/explosys/influenza/model/InfluenzaDglcomputeDeadFraction(DDD)D  !t SourceFileInfluenzaDgl.java InnerClasses0    C**+*(* f  E**'*"h# $%& PK s 50=3de/explosys/influenza/model/InfluenzaDgl$Root.class.@-de/explosys/influenza/model/InfluenzaDgl$Rootjava/lang/Object()VCode  LineNumberTableLocalVariableTablethis/Lde/explosys/influenza/model/InfluenzaDgl$Root;eval(D)DfindRoot(DD)D Exceptionsjava/lang/RuntimeExceptionfind  java/lang/StringBuffer Range error ((Ljava/lang/String;)V  append(D)Ljava/lang/StringBuffer;  !, #,(Ljava/lang/String;)Ljava/lang/StringBuffer; % &)(toString()Ljava/lang/String; *+ , aDb?<V  6ccval SourceFileInfluenzaDgl.java InnerClasses(de/explosys/influenza/model/InfluenzaDgl=Root /*    L') *'))' *)'YY'"$')")'-.  & L L/0L10 ?2')ck9)'g4*79 *) *' &  %-4< 4? ?/0?10 680!90:;< >?PK s 5>P>P.de/explosys/influenza/model/InfluenzaDgl.class.(de/explosys/influenza/model/InfluenzaDgljava/lang/Object4de/explosys/influenza/odesolver/DifferentialEquation AGE_CHILDI ConstantValue AGE_ADULT AGE_ELDERLY AGEGROUPSRISK_LOW RISK_HIGH RISKGROUPSMED_NOMED_YES MEDGROUPSISO_NOISO_YES ISOGROUPSESTAGE_1ESTAGE_2 ESTAGE_LAST ESTAGEGROUPSISTAGE_1ISTAGE_2 ISTAGE_LAST ISTAGEGROUPSRSTAGE_1RSTAGE_2 RSTAGE_LAST RSTAGEGROUPS ITYPE_AITYPE_MITYPE_VITYPE_WITYPE_XITYPE_H ITYPEGROUPSSsizeEsize*Asize9MsizeVsizeWsizerXsizeHsizeRsizeDsizeIsizeSoffsetEoffsetAoffset0MoffsetiVoffsetWoffsetXoffsetMHoffsetRoffsetDoffsetIoffset WorkReduction Outpatients AntiviralsHospitalisation WorkLossCm[[DbbD individuals[DageRisk childrenMix workingMix retiredMixexpDur infDurMild infDurSevererecDurasymptomaticFractionsevereFraction hospitalLow hospitalHighdeadFractionUntreatedr0halfInfectiosityprodromalStageseInfFactinfFactAsymptomatic infFactSevereantiviralRessourceconsultationDelaymaxTreatmentDelaysevereTreatFractsevereTreatBeginsevereTreatEndextremeTreatFractextremeTreatBeginextremeTreatEndtreatEfficacyInfectiousnessinfDurReduction treatHospPrevisolationModerately isolationHomeisolationHospitalisolationBegin isolationEndgeneralReductionFractiongeneralReductionBegingeneralReductionEndschoolContactsFractionschoolClosingBeginschoolClosingEnd reDistributeeventCancelingFractioneventCancelingBegineventCancelingEndtotalageDistribution ageMatrixdeltainfDur[[[Drho hospFract deadFractioninfFactcontagiousnessalpha hospPrevTreatdestinygammamaxTreatmentStage[IeBetabeta[[[[[Dtau susceptibles eigenvectorinitialExposedlambda()VCode LineNumberTableLocalVariableTable @f@$`@@ fg ?Q?Q?zG hg @`Q@; =q@' ig @N}p =@:\( jg @K(\ kg ?ffffff le @@ffffff mg  ng @ oe ?Q pe ? qe ?^Y5;O?T6?:)y rg ?LPr[?HjܱF?# sg ?^"?(F?H˒:* tg  @ ue ? ve  w  xe  ye  ze  {e  |e @ }e " ~e $ e &@@ e * e , e . e 0?陙 e 4? e 8 e : e < e > e @ e B e D e F e H e J e L e N e P e R e T e V e X g Zc c ] _ c a g c g e g i c k n g p c r g t initialize v wthis*Lde/explosys/influenza/model/InfluenzaDgl; e { e } e @" e  e  g *de/explosys/influenza/model/InfluenzaDgl$1-(Lde/explosys/influenza/model/InfluenzaDgl;)V  findRoot(DD)D   e @3(III)D  java/lang/Mathceil(D)D  *de/explosys/influenza/model/InfluenzaDgl$2  *de/explosys/influenza/model/InfluenzaDgl$3/(Lde/explosys/influenza/model/InfluenzaDgl;DD)V   agetyperiskmedageSusageInfdeadgam computeR0(I)D  (II)D    (IIIII)D   Jama/Matrix([[D)V  eig ()LJama/EigenvalueDecomposition;  Jama/EigenvalueDecompositiongetRealEigenvalues()[D  getImagEigenvalues  java/lang/SystemerrLjava/io/PrintStream;  java/lang/StringBufferImaginary eigenvalue ((Ljava/lang/String;)V  append(D)Ljava/lang/StringBuffer;  , ,(Ljava/lang/String;)Ljava/lang/StringBuffer;   ) ignored.toString()Ljava/lang/String;  java/io/PrintStreamprintln   g getV()LJama/Matrix;  get   bc  de bfactornextGenerationMatrixtempeigenLJama/EigenvalueDecomposition;realEigenvaluesimagEigenvalues maxEigenvaluemaxIisumcomputeDeadFraction(DDD)DtresultproductiStage computeF50pow  muallStagesInfectiosityhalfInfectiousStageshalfStagesInfectiosity getInitialYS(II)I  E(III)I    dimensioninVector getInitialX()Deval(D[D[D)V  (  *A , -M / 0V 2 3X 5 6W 8 9H ; <  >(I)I @ AR C D e@ F @ HtimeyoutcancellingFactorredistributionFactor1redistributionFactor2 isolation generalFactoreStagetodaySevereTreatFracttodayExtremeTreatFract previousStagerStageisoeStagesmain([Ljava/lang/String;)VcurrentTimeMillis()J [\ ]   ` $% b+de/explosys/influenza/odesolver/RungeKutta4d9(Lde/explosys/influenza/odesolver/DifferentialEquation;)V f egsetStart(D[D)V ij ekgetY m enrun(D)V pq ergetN()I tu ev L x, Error=z Time = |(J)Ljava/lang/StringBuffer; ~ args[Ljava/lang/String;time1J influenzaDgl startVectorstartXrk4-Lde/explosys/influenza/odesolver/RungeKutta4;daysstepsoldstepsS0SAH0HAWROPCOPProof outVectortime2 SourceFileInfluenzaDgl.java InnerClasses-de/explosys/influenza/model/InfluenzaDgl$RootRoot!                                !  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Mh``v  ;Mh`h``z C?  h``~  Ve@0` @0`  YZ^@Y_N-a:-c9eY-h:l66 6 `: `: `: `:`:`:`:`:`:`:`:`:`:`:`:o:6#sw d6 w6 o: R R RRRRRRRRRR66< \11cR6 \1!1cR6 \1.1cR\111cR\141cR\171cR6.\1:1cR\1=1cR҄z6\1E1cR \1G1cR\1I1cR1R1R1d1gR 1 1c 1c1c1c1c1c1c1c1c1cRyY{1gܸ^7yY}e2L "+036>FNV^fnv~ #)/AG[ent/?HS^u L! zge"03 6 >g Fg N,g V/g^gfgngvg~Cg|egtglgdg\gTgMg* &",BD!Rq4V"PK s 5:F%%4de/explosys/influenza/model/InfluenzaDglRunner.class.$.de/explosys/influenza/model/InfluenzaDglRunner(de/explosys/influenza/model/InfluenzaDgloutLjava/io/PrintStream;daysIS[DEAMS0SAH0HARDWROPCOPProof()VCode      ! # %  '  )  +  -  /  1  3  5  7  9  ;LineNumberTableLocalVariableTablethis0Lde/explosys/influenza/model/InfluenzaDglRunner;runR0NoIntervention(DDD)Vjava/lang/ErrorCeUnresolved compilation problem: The method format(String, double) is undefined for the type String E(Ljava/lang/String;)V G DHr0minr0maxdeltarunX50NoInterventionUnresolved compilation problems: The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String Nx50minx50maxrunTripleInterventionScenariosjava/util/ArrayListS T@r0 X Y  [Day ]java/io/PrintStream_print aG `brunNoIntervention d eNoIg addResults%(Ljava/util/List;Ljava/lang/String;)V ij krunAntiviralTreatment m nAvTprunSocialDistancing r sSoDurunCombinedIntervention w xCoIz| printResults%(Ljava/lang/String;Ljava/util/List;)V ~ listLjava/util/List;}Unresolved compilation problem: The method format(String, String, String, String, String) is undefined for the type String valueLjava/lang/String;addOutpatientseUnresolved compilation problem: The method format(String, String) is undefined for the type String mUnresolved compilation problem: The method format(Locale, String, double) is undefined for the type String prerunLimitedAntiviralsAll(DDI)VsevereTreatFract  extremeTreatFract  severeTreatBegin  extremeTreatBegin  runLimitedAntivirals  minAntivirals maxAntiviralsnrunLimitedAntiviralsLater(DDIII)V severeBegin extremeBeginrunLimitedAntiviralsHosprunAntiviralsLater(DIII)VjUnresolved compilation problem: The method format(Locale, String, int) is undefined for the type String antiviralRessourcebeginendrunOptimalGeneralReduction(DDII)VUnresolved compilation problems: The method format(String, double) is undefined for the type String The method printf(String, int) is undefined for the type PrintStream The method printf(String) is undefined for the type PrintStream The method printf(String, double) is undefined for the type PrintStream The method printf(String, double) is undefined for the type PrintStream The method printf(String, double) is undefined for the type PrintStream  minReduction maxReductiondurationrunGeneralReduction (II[[[D)VgeneralReductionBegin  generalReductionEnd  run(Z)V  getPeakDay([D)I  getPeakValue([D)D total  reductionIndexinterventionDurationresult[[[DpeakDay peakValue totalValueirunGeneralReductionVersusBegin (DDDIII)VUnresolved compilation problems: The method format(String, double) is undefined for the type PrintStream The method format(String, double) is undefined for the type PrintStream The method format(Locale, String, double, int, int, double) is undefined for the type PrintStream  reductionMin reductionMaxreductionDeltabeginMinbeginMax beginDeltarunOptimalSchoolClosurerunSchoolClosurejava/lang/System [java/lang/StringBufferSchoolClosure:  HschoolContactsFraction  append(D)Ljava/lang/StringBuffer; toString()Ljava/lang/String; println G `schoolClosingBegin  schoolClosingEnd  runSevereTreatment(DDIDD)VUnresolved compilation problems: The method format(String, double, double) is undefined for the type String The method format(String, double) is undefined for the type String interventionBegininterventionEndinterventionReductionisolationModerately   isolationHome  isolationHospital    generalReductionFraction    ??ə?333333@yUnresolved compilation problems: The method format(String, int) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, double) is undefined for the type String The method format(String, int) is undefined for the type String The method format(String, double) is undefined for the type String dumpZarraymain([Ljava/lang/String;)VSUnresolved compilation problem: The constructor PrintStream(String) is undefined args[Ljava/lang/String; 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J@AJz 0{ |}PK s 5|L:de/explosys/influenza/odesolver/DifferentialEquation.class. 4de/explosys/influenza/odesolver/DifferentialEquationjava/lang/Objecteval(D[D[D)V getInitialY()[D getInitialX()D SourceFileDifferentialEquation.java   PK s 5@.::1de/explosys/influenza/util/EigenValueTester.class.p+de/explosys/influenza/util/EigenValueTesterjava/lang/Object()VCode  LineNumberTableLocalVariableTablethis-Lde/explosys/influenza/util/EigenValueTester; printArray([D)Vjava/lang/SystemoutLjava/io/PrintStream;  [java/io/PrintStreamprint(Ljava/lang/String;)V  java/lang/StringBuffer   "append(D)Ljava/lang/StringBuffer; $% &toString()Ljava/lang/String; () * ],println . /a[DiImain([Ljava/lang/String;)V2@`Q@; =q@'@N}p =@:\(@K(\@f@$`@@[[DJ Jama/MatrixL([[D)V N MO(II)V Q MReig ()LJama/EigenvalueDecomposition; TU MVJama/EigenvalueDecompositionXgetRealEigenvalues()[D Z[ Y\  ^getImagEigenvalues `[ Yaargs[Ljava/lang/String;smjmatrix LJama/Matrix;eigenLJama/EigenvalueDecomposition;tempD SourceFileEigenValueTester.java!/*    7<Y!#*1'+*-0  %.6 712 $34 567Q7YY8RY:RYRY@RSYY6(Lde/explosys/influenza/util/InfluenzaResistenceDgl;)VCode()V    LineNumberTableLocalVariableTablethis5Lde/explosys/influenza/util/InfluenzaResistenceDgl$1;eval(D)D1de/explosys/influenza/util/InfluenzaResistenceDgl computeR0  xD SourceFileInfluenzaResistenceDgl.java InnerClasses0  8 * *+ "   = *'$   PK s 5Pbb9de/explosys/influenza/util/InfluenzaResistenceDgl$2.class.'3de/explosys/influenza/util/InfluenzaResistenceDgl$26de/explosys/influenza/util/InfluenzaResistenceDgl$Rootthis$03Lde/explosys/influenza/util/InfluenzaResistenceDgl; Syntheticval$gamDval$dead8(Lde/explosys/influenza/util/InfluenzaResistenceDgl;DD)VCode()V       LineNumberTableLocalVariableTablethis5Lde/explosys/influenza/util/InfluenzaResistenceDgl$2;eval(D)D1de/explosys/influenza/util/InfluenzaResistenceDglcomputeDeadFraction(DDD)D  !t SourceFileInfluenzaResistenceDgl.java InnerClasses0    C**+*(* ;  E**'*"=# $%& PK s 5K<de/explosys/influenza/util/InfluenzaResistenceDgl$Root.class.@6de/explosys/influenza/util/InfluenzaResistenceDgl$Rootjava/lang/Object()VCode  LineNumberTableLocalVariableTablethis8Lde/explosys/influenza/util/InfluenzaResistenceDgl$Root;eval(D)DfindRoot(DD)D Exceptionsjava/lang/RuntimeExceptionfind  java/lang/StringBuffer Range error ((Ljava/lang/String;)V  append(D)Ljava/lang/StringBuffer;  !, #,(Ljava/lang/String;)Ljava/lang/StringBuffer; % &)(toString()Ljava/lang/String; *+ , aDb?<V  6ccval SourceFileInfluenzaResistenceDgl.java InnerClasses1de/explosys/influenza/util/InfluenzaResistenceDgl=Root /*    L') *'))' *)'YY'"$')")'-.   & L L/0L10 ?2')ck9)'g4*79 *) *' &  %-4< 4? 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H x. /%- e!- yH P. V~ Y" MW$ `D& ]@-( :-( K.B -pZ-vK.,1 &*+M*+*******%*>>6*,21,21**~ф**~*?>'6*2,21R****V***V**X>'6*V2,21R****)z^_ `a!b+c5e:f?gEh^gwflmnonmtwz{}~~}!%*\ &+,& <S-B5./.-/-.>Y***)* +,/*)* +,/*%)* +,~Y**L+M>]6 ,2R*,2*1R*%1,2`*%1R*%1,2d*%1R*+)6  '3>IYdq|*4~+,nie.-PK mD4)Jama/ChangeLog2005-07-13 Bruce Miller * Version 1.0.2 Released. 2005-07-12 Bruce Miller * Although SVD sometimes fails on cases m < n, the test code, apparently successfully, invokes SVD to compute rank on an m * Version 1.0.1 Released. 2000-09-11 Bruce Miller * Jama.Matrix print methods which create a NumberFormat, now set its Locale to US so that the reader will recognize them even when the default locale is not US. Similar change to Jama.test.TestMatrix. (Thanks Ulrich Eberhardinger ) 1998-08-05 The Jama Team * Initial Version released (1.0.0) PK mD4UJama/doc/allclasses-frame.html All Classes All Classes
CholeskyDecomposition
EigenvalueDecomposition
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Matrix
QRDecomposition
SingularValueDecomposition
PK mD4 nCii Jama/doc/allclasses-noframe.html All Classes All Classes
CholeskyDecomposition
EigenvalueDecomposition
LUDecomposition
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PK mD4*,Jama/doc/constant-values.html Constant Field Values

Constant Field Values


Contents


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Deprecated API


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PK mD4˦r!!Jama/doc/help-doc.html API Help

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PK mD4x]bllJama/doc/index-all.html Index
A C D E G I J L M N P Q R S T U

A

arrayLeftDivide(Matrix) - Method in class Jama.Matrix
Element-by-element left division, C = A.\B
arrayLeftDivideEquals(Matrix) - Method in class Jama.Matrix
Element-by-element left division in place, A = A.\B
arrayRightDivide(Matrix) - Method in class Jama.Matrix
Element-by-element right division, C = A./B
arrayRightDivideEquals(Matrix) - Method in class Jama.Matrix
Element-by-element right division in place, A = A./B
arrayTimes(Matrix) - Method in class Jama.Matrix
Element-by-element multiplication, C = A.*B
arrayTimesEquals(Matrix) - Method in class Jama.Matrix
Element-by-element multiplication in place, A = A.*B

C

chol() - Method in class Jama.Matrix
Cholesky Decomposition
CholeskyDecomposition - Class in Jama
Cholesky Decomposition.
CholeskyDecomposition(Matrix) - Constructor for class Jama.CholeskyDecomposition
Cholesky algorithm for symmetric and positive definite matrix.
clone() - Method in class Jama.Matrix
Clone the Matrix object.
cond() - Method in class Jama.Matrix
Matrix condition (2 norm)
cond() - Method in class Jama.SingularValueDecomposition
Two norm condition number
constructWithCopy(double[][]) - Static method in class Jama.Matrix
Construct a matrix from a copy of a 2-D array.
copy() - Method in class Jama.Matrix
Make a deep copy of a matrix

D

det() - Method in class Jama.LUDecomposition
Determinant
det() - Method in class Jama.Matrix
Matrix determinant

E

eig() - Method in class Jama.Matrix
Eigenvalue Decomposition
EigenvalueDecomposition - Class in Jama
Eigenvalues and eigenvectors of a real matrix.
EigenvalueDecomposition(Matrix) - Constructor for class Jama.EigenvalueDecomposition
Check for symmetry, then construct the eigenvalue decomposition

G

get(int, int) - Method in class Jama.Matrix
Get a single element.
getArray() - Method in class Jama.Matrix
Access the internal two-dimensional array.
getArrayCopy() - Method in class Jama.Matrix
Copy the internal two-dimensional array.
getColumnDimension() - Method in class Jama.Matrix
Get column dimension.
getColumnPackedCopy() - Method in class Jama.Matrix
Make a one-dimensional column packed copy of the internal array.
getD() - Method in class Jama.EigenvalueDecomposition
Return the block diagonal eigenvalue matrix
getDoublePivot() - Method in class Jama.LUDecomposition
Return pivot permutation vector as a one-dimensional double array
getH() - Method in class Jama.QRDecomposition
Return the Householder vectors
getImagEigenvalues() - Method in class Jama.EigenvalueDecomposition
Return the imaginary parts of the eigenvalues
getL() - Method in class Jama.CholeskyDecomposition
Return triangular factor.
getL() - Method in class Jama.LUDecomposition
Return lower triangular factor
getMatrix(int, int, int, int) - Method in class Jama.Matrix
Get a submatrix.
getMatrix(int[], int[]) - Method in class Jama.Matrix
Get a submatrix.
getMatrix(int, int, int[]) - Method in class Jama.Matrix
Get a submatrix.
getMatrix(int[], int, int) - Method in class Jama.Matrix
Get a submatrix.
getPivot() - Method in class Jama.LUDecomposition
Return pivot permutation vector
getQ() - Method in class Jama.QRDecomposition
Generate and return the (economy-sized) orthogonal factor
getR() - Method in class Jama.QRDecomposition
Return the upper triangular factor
getRealEigenvalues() - Method in class Jama.EigenvalueDecomposition
Return the real parts of the eigenvalues
getRowDimension() - Method in class Jama.Matrix
Get row dimension.
getRowPackedCopy() - Method in class Jama.Matrix
Make a one-dimensional row packed copy of the internal array.
getS() - Method in class Jama.SingularValueDecomposition
Return the diagonal matrix of singular values
getSingularValues() - Method in class Jama.SingularValueDecomposition
Return the one-dimensional array of singular values
getU() - Method in class Jama.LUDecomposition
Return upper triangular factor
getU() - Method in class Jama.SingularValueDecomposition
Return the left singular vectors
getV() - Method in class Jama.EigenvalueDecomposition
Return the eigenvector matrix
getV() - Method in class Jama.SingularValueDecomposition
Return the right singular vectors

I

identity(int, int) - Static method in class Jama.Matrix
Generate identity matrix
inverse() - Method in class Jama.Matrix
Matrix inverse or pseudoinverse
isFullRank() - Method in class Jama.QRDecomposition
Is the matrix full rank?
isNonsingular() - Method in class Jama.LUDecomposition
Is the matrix nonsingular?
isSPD() - Method in class Jama.CholeskyDecomposition
Is the matrix symmetric and positive definite?

J

Jama - package Jama
 

L

lu() - Method in class Jama.Matrix
LU Decomposition
LUDecomposition - Class in Jama
LU Decomposition.
LUDecomposition(Matrix) - Constructor for class Jama.LUDecomposition
LU Decomposition

M

Matrix - Class in Jama
Jama = Java Matrix class.
Matrix(int, int) - Constructor for class Jama.Matrix
Construct an m-by-n matrix of zeros.
Matrix(int, int, double) - Constructor for class Jama.Matrix
Construct an m-by-n constant matrix.
Matrix(double[][]) - Constructor for class Jama.Matrix
Construct a matrix from a 2-D array.
Matrix(double[][], int, int) - Constructor for class Jama.Matrix
Construct a matrix quickly without checking arguments.
Matrix(double[], int) - Constructor for class Jama.Matrix
Construct a matrix from a one-dimensional packed array
minus(Matrix) - Method in class Jama.Matrix
C = A - B
minusEquals(Matrix) - Method in class Jama.Matrix
A = A - B

N

norm1() - Method in class Jama.Matrix
One norm
norm2() - Method in class Jama.Matrix
Two norm
norm2() - Method in class Jama.SingularValueDecomposition
Two norm
normF() - Method in class Jama.Matrix
Frobenius norm
normInf() - Method in class Jama.Matrix
Infinity norm

P

plus(Matrix) - Method in class Jama.Matrix
C = A + B
plusEquals(Matrix) - Method in class Jama.Matrix
A = A + B
print(int, int) - Method in class Jama.Matrix
Print the matrix to stdout.
print(PrintWriter, int, int) - Method in class Jama.Matrix
Print the matrix to the output stream.
print(NumberFormat, int) - Method in class Jama.Matrix
Print the matrix to stdout.
print(PrintWriter, NumberFormat, int) - Method in class Jama.Matrix
Print the matrix to the output stream.

Q

qr() - Method in class Jama.Matrix
QR Decomposition
QRDecomposition - Class in Jama
QR Decomposition.
QRDecomposition(Matrix) - Constructor for class Jama.QRDecomposition
QR Decomposition, computed by Householder reflections.

R

random(int, int) - Static method in class Jama.Matrix
Generate matrix with random elements
rank() - Method in class Jama.Matrix
Matrix rank
rank() - Method in class Jama.SingularValueDecomposition
Effective numerical matrix rank
read(BufferedReader) - Static method in class Jama.Matrix
Read a matrix from a stream.

S

set(int, int, double) - Method in class Jama.Matrix
Set a single element.
setMatrix(int, int, int, int, Matrix) - Method in class Jama.Matrix
Set a submatrix.
setMatrix(int[], int[], Matrix) - Method in class Jama.Matrix
Set a submatrix.
setMatrix(int[], int, int, Matrix) - Method in class Jama.Matrix
Set a submatrix.
setMatrix(int, int, int[], Matrix) - Method in class Jama.Matrix
Set a submatrix.
SingularValueDecomposition - Class in Jama
Singular Value Decomposition.
SingularValueDecomposition(Matrix) - Constructor for class Jama.SingularValueDecomposition
Construct the singular value decomposition
solve(Matrix) - Method in class Jama.CholeskyDecomposition
Solve A*X = B
solve(Matrix) - Method in class Jama.LUDecomposition
Solve A*X = B
solve(Matrix) - Method in class Jama.Matrix
Solve A*X = B
solve(Matrix) - Method in class Jama.QRDecomposition
Least squares solution of A*X = B
solveTranspose(Matrix) - Method in class Jama.Matrix
Solve X*A = B, which is also A'*X' = B'
svd() - Method in class Jama.Matrix
Singular Value Decomposition

T

times(double) - Method in class Jama.Matrix
Multiply a matrix by a scalar, C = s*A
times(Matrix) - Method in class Jama.Matrix
Linear algebraic matrix multiplication, A * B
timesEquals(double) - Method in class Jama.Matrix
Multiply a matrix by a scalar in place, A = s*A
trace() - Method in class Jama.Matrix
Matrix trace.
transpose() - Method in class Jama.Matrix
Matrix transpose.

U

uminus() - Method in class Jama.Matrix
Unary minus

A C D E G I J L M N P Q R S T U

PK mD4i*fJama/doc/index.html Generated Documentation (Untitled) <H2> Frame Alert</H2> <P> This document is designed to be viewed using the frames feature. If you see this message, you are using a non-frame-capable web client. <BR> Link to<A HREF="Jama/package-summary.html">Non-frame version.</A> PK mD4j=||Jama/doc/overview-tree.html Class Hierarchy

Hierarchy For All Packages

Package Hierarchies:
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Class Hierarchy



PK mD4qnJama/doc/package-listJama PK mD4 s44Jama/doc/serialized-form.html Serialized Form

Serialized Form


Package Jama

Class Jama.CholeskyDecomposition extends java.lang.Object implements Serializable

Serialized Fields

L

double[][] L
Array for internal storage of decomposition.

internal array storage.

n

int n
Row and column dimension (square matrix).

matrix dimension.

isspd

boolean isspd
Symmetric and positive definite flag.

is symmetric and positive definite flag.

Class Jama.EigenvalueDecomposition extends java.lang.Object implements Serializable

Serialized Fields

n

int n
Row and column dimension (square matrix).

matrix dimension.

issymmetric

boolean issymmetric
Symmetry flag.

internal symmetry flag.

d

double[] d
Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

e

double[] e
Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

V

double[][] V
Array for internal storage of eigenvectors.

internal storage of eigenvectors.

H

double[][] H
Array for internal storage of nonsymmetric Hessenberg form.

internal storage of nonsymmetric Hessenberg form.

ort

double[] ort
Working storage for nonsymmetric algorithm.

working storage for nonsymmetric algorithm.

Class Jama.LUDecomposition extends java.lang.Object implements Serializable

Serialized Fields

LU

double[][] LU
Array for internal storage of decomposition.

internal array storage.

m

int m
Row and column dimensions, and pivot sign.

column dimension.

n

int n
Row and column dimensions, and pivot sign.

column dimension.

pivsign

int pivsign
Row and column dimensions, and pivot sign.

column dimension.

piv

int[] piv
Internal storage of pivot vector.

pivot vector.

Class Jama.Matrix extends java.lang.Object implements Serializable

Serialized Fields

A

double[][] A
Array for internal storage of elements.

internal array storage.

m

int m
Row and column dimensions.

row dimension.

n

int n
Row and column dimensions.

row dimension.

Class Jama.QRDecomposition extends java.lang.Object implements Serializable

Serialized Fields

QR

double[][] QR
Array for internal storage of decomposition.

internal array storage.

m

int m
Row and column dimensions.

column dimension.

n

int n
Row and column dimensions.

column dimension.

Rdiag

double[] Rdiag
Array for internal storage of diagonal of R.

diagonal of R.

Class Jama.SingularValueDecomposition extends java.lang.Object implements Serializable

Serialized Fields

U

double[][] U
Arrays for internal storage of U and V.

internal storage of U.

V

double[][] V
Arrays for internal storage of U and V.

internal storage of U.

s

double[] s
Array for internal storage of singular values.

internal storage of singular values.

m

int m
Row and column dimensions.

row dimension.

n

int n
Row and column dimensions.

row dimension.



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Jama
Class CholeskyDecomposition

java.lang.Object
  extended by Jama.CholeskyDecomposition
All Implemented Interfaces:
java.io.Serializable

public class CholeskyDecomposition
extends java.lang.Object
implements java.io.Serializable

Cholesky Decomposition.

For a symmetric, positive definite matrix A, the Cholesky decomposition is an lower triangular matrix L so that A = L*L'.

If the matrix is not symmetric or positive definite, the constructor returns a partial decomposition and sets an internal flag that may be queried by the isSPD() method.

See Also:
Serialized Form

Constructor Summary
CholeskyDecomposition(Matrix Arg)
          Cholesky algorithm for symmetric and positive definite matrix.
 
Method Summary
 Matrix getL()
          Return triangular factor.
 boolean isSPD()
          Is the matrix symmetric and positive definite?
 Matrix solve(Matrix B)
          Solve A*X = B
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CholeskyDecomposition

public CholeskyDecomposition(Matrix Arg)
Cholesky algorithm for symmetric and positive definite matrix.

Parameters:
A - Square, symmetric matrix.
Method Detail

isSPD

public boolean isSPD()
Is the matrix symmetric and positive definite?

Returns:
true if A is symmetric and positive definite.

getL

public Matrix getL()
Return triangular factor.

Returns:
L

solve

public Matrix solve(Matrix B)
Solve A*X = B

Parameters:
B - A Matrix with as many rows as A and any number of columns.
Returns:
X so that L*L'*X = B
Throws:
java.lang.IllegalArgumentException - Matrix row dimensions must agree.
java.lang.RuntimeException - Matrix is not symmetric positive definite.


PK mD411*Jama/doc/Jama/EigenvalueDecomposition.html EigenvalueDecomposition

Jama
Class EigenvalueDecomposition

java.lang.Object
  extended by Jama.EigenvalueDecomposition
All Implemented Interfaces:
java.io.Serializable

public class EigenvalueDecomposition
extends java.lang.Object
implements java.io.Serializable

Eigenvalues and eigenvectors of a real matrix.

If A is symmetric, then A = V*D*V' where the eigenvalue matrix D is diagonal and the eigenvector matrix V is orthogonal. I.e. A = V.times(D.times(V.transpose())) and V.times(V.transpose()) equals the identity matrix.

If A is not symmetric, then the eigenvalue matrix D is block diagonal with the real eigenvalues in 1-by-1 blocks and any complex eigenvalues, lambda + i*mu, in 2-by-2 blocks, [lambda, mu; -mu, lambda]. The columns of V represent the eigenvectors in the sense that A*V = V*D, i.e. A.times(V) equals V.times(D). The matrix V may be badly conditioned, or even singular, so the validity of the equation A = V*D*inverse(V) depends upon V.cond().

See Also:
Serialized Form

Constructor Summary
EigenvalueDecomposition(Matrix Arg)
          Check for symmetry, then construct the eigenvalue decomposition
 
Method Summary
 Matrix getD()
          Return the block diagonal eigenvalue matrix
 double[] getImagEigenvalues()
          Return the imaginary parts of the eigenvalues
 double[] getRealEigenvalues()
          Return the real parts of the eigenvalues
 Matrix getV()
          Return the eigenvector matrix
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

EigenvalueDecomposition

public EigenvalueDecomposition(Matrix Arg)
Check for symmetry, then construct the eigenvalue decomposition

Parameters:
A - Square matrix
Method Detail

getV

public Matrix getV()
Return the eigenvector matrix

Returns:
V

getRealEigenvalues

public double[] getRealEigenvalues()
Return the real parts of the eigenvalues

Returns:
real(diag(D))

getImagEigenvalues

public double[] getImagEigenvalues()
Return the imaginary parts of the eigenvalues

Returns:
imag(diag(D))

getD

public Matrix getD()
Return the block diagonal eigenvalue matrix

Returns:
D


PK mD4Ǘ788"Jama/doc/Jama/LUDecomposition.html LUDecomposition

Jama
Class LUDecomposition

java.lang.Object
  extended by Jama.LUDecomposition
All Implemented Interfaces:
java.io.Serializable

public class LUDecomposition
extends java.lang.Object
implements java.io.Serializable

LU Decomposition.

For an m-by-n matrix A with m >= n, the LU decomposition is an m-by-n unit lower triangular matrix L, an n-by-n upper triangular matrix U, and a permutation vector piv of length m so that A(piv,:) = L*U. If m < n, then L is m-by-m and U is m-by-n.

The LU decompostion with pivoting always exists, even if the matrix is singular, so the constructor will never fail. The primary use of the LU decomposition is in the solution of square systems of simultaneous linear equations. This will fail if isNonsingular() returns false.

See Also:
Serialized Form

Constructor Summary
LUDecomposition(Matrix A)
          LU Decomposition
 
Method Summary
 double det()
          Determinant
 double[] getDoublePivot()
          Return pivot permutation vector as a one-dimensional double array
 Matrix getL()
          Return lower triangular factor
 int[] getPivot()
          Return pivot permutation vector
 Matrix getU()
          Return upper triangular factor
 boolean isNonsingular()
          Is the matrix nonsingular?
 Matrix solve(Matrix B)
          Solve A*X = B
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

LUDecomposition

public LUDecomposition(Matrix A)
LU Decomposition

Parameters:
A - Rectangular matrix
Method Detail

isNonsingular

public boolean isNonsingular()
Is the matrix nonsingular?

Returns:
true if U, and hence A, is nonsingular.

getL

public Matrix getL()
Return lower triangular factor

Returns:
L

getU

public Matrix getU()
Return upper triangular factor

Returns:
U

getPivot

public int[] getPivot()
Return pivot permutation vector

Returns:
piv

getDoublePivot

public double[] getDoublePivot()
Return pivot permutation vector as a one-dimensional double array

Returns:
(double) piv

det

public double det()
Determinant

Returns:
det(A)
Throws:
java.lang.IllegalArgumentException - Matrix must be square

solve

public Matrix solve(Matrix B)
Solve A*X = B

Parameters:
B - A Matrix with as many rows as A and any number of columns.
Returns:
X so that L*U*X = B(piv,:)
Throws:
java.lang.IllegalArgumentException - Matrix row dimensions must agree.
java.lang.RuntimeException - Matrix is singular.


PK mD4Z;Jama/doc/Jama/Matrix.html Matrix

Jama
Class Matrix

java.lang.Object
  extended by Jama.Matrix
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable

public class Matrix
extends java.lang.Object
implements java.lang.Cloneable, java.io.Serializable

Jama = Java Matrix class.

The Java Matrix Class provides the fundamental operations of numerical linear algebra. Various constructors create Matrices from two dimensional arrays of double precision floating point numbers. Various "gets" and "sets" provide access to submatrices and matrix elements. Several methods implement basic matrix arithmetic, including matrix addition and multiplication, matrix norms, and element-by-element array operations. Methods for reading and printing matrices are also included. All the operations in this version of the Matrix Class involve real matrices. Complex matrices may be handled in a future version.

Five fundamental matrix decompositions, which consist of pairs or triples of matrices, permutation vectors, and the like, produce results in five decomposition classes. These decompositions are accessed by the Matrix class to compute solutions of simultaneous linear equations, determinants, inverses and other matrix functions. The five decompositions are:

  • Cholesky Decomposition of symmetric, positive definite matrices.
  • LU Decomposition of rectangular matrices.
  • QR Decomposition of rectangular matrices.
  • Singular Value Decomposition of rectangular matrices.
  • Eigenvalue Decomposition of both symmetric and nonsymmetric square matrices.
Example of use:

Solve a linear system A x = b and compute the residual norm, ||b - A x||.

      double[][] vals = {{1.,2.,3},{4.,5.,6.},{7.,8.,10.}};
      Matrix A = new Matrix(vals);
      Matrix b = Matrix.random(3,1);
      Matrix x = A.solve(b);
      Matrix r = A.times(x).minus(b);
      double rnorm = r.normInf();

See Also:
Serialized Form

Constructor Summary
Matrix(double[][] A)
          Construct a matrix from a 2-D array.
Matrix(double[][] A, int m, int n)
          Construct a matrix quickly without checking arguments.
Matrix(double[] vals, int m)
          Construct a matrix from a one-dimensional packed array
Matrix(int m, int n)
          Construct an m-by-n matrix of zeros.
Matrix(int m, int n, double s)
          Construct an m-by-n constant matrix.
 
Method Summary
 Matrix arrayLeftDivide(Matrix B)
          Element-by-element left division, C = A.\B
 Matrix arrayLeftDivideEquals(Matrix B)
          Element-by-element left division in place, A = A.\B
 Matrix arrayRightDivide(Matrix B)
          Element-by-element right division, C = A./B
 Matrix arrayRightDivideEquals(Matrix B)
          Element-by-element right division in place, A = A./B
 Matrix arrayTimes(Matrix B)
          Element-by-element multiplication, C = A.*B
 Matrix arrayTimesEquals(Matrix B)
          Element-by-element multiplication in place, A = A.*B
 CholeskyDecomposition chol()
          Cholesky Decomposition
 java.lang.Object clone()
          Clone the Matrix object.
 double cond()
          Matrix condition (2 norm)
static Matrix constructWithCopy(double[][] A)
          Construct a matrix from a copy of a 2-D array.
 Matrix copy()
          Make a deep copy of a matrix
 double det()
          Matrix determinant
 EigenvalueDecomposition eig()
          Eigenvalue Decomposition
 double get(int i, int j)
          Get a single element.
 double[][] getArray()
          Access the internal two-dimensional array.
 double[][] getArrayCopy()
          Copy the internal two-dimensional array.
 int getColumnDimension()
          Get column dimension.
 double[] getColumnPackedCopy()
          Make a one-dimensional column packed copy of the internal array.
 Matrix getMatrix(int[] r, int[] c)
          Get a submatrix.
 Matrix getMatrix(int[] r, int j0, int j1)
          Get a submatrix.
 Matrix getMatrix(int i0, int i1, int[] c)
          Get a submatrix.
 Matrix getMatrix(int i0, int i1, int j0, int j1)
          Get a submatrix.
 int getRowDimension()
          Get row dimension.
 double[] getRowPackedCopy()
          Make a one-dimensional row packed copy of the internal array.
static Matrix identity(int m, int n)
          Generate identity matrix
 Matrix inverse()
          Matrix inverse or pseudoinverse
 LUDecomposition lu()
          LU Decomposition
 Matrix minus(Matrix B)
          C = A - B
 Matrix minusEquals(Matrix B)
          A = A - B
 double norm1()
          One norm
 double norm2()
          Two norm
 double normF()
          Frobenius norm
 double normInf()
          Infinity norm
 Matrix plus(Matrix B)
          C = A + B
 Matrix plusEquals(Matrix B)
          A = A + B
 void print(int w, int d)
          Print the matrix to stdout.
 void print(java.text.NumberFormat format, int width)
          Print the matrix to stdout.
 void print(java.io.PrintWriter output, int w, int d)
          Print the matrix to the output stream.
 void print(java.io.PrintWriter output, java.text.NumberFormat format, int width)
          Print the matrix to the output stream.
 QRDecomposition qr()
          QR Decomposition
static Matrix random(int m, int n)
          Generate matrix with random elements
 int rank()
          Matrix rank
static Matrix read(java.io.BufferedReader input)
          Read a matrix from a stream.
 void set(int i, int j, double s)
          Set a single element.
 void setMatrix(int[] r, int[] c, Matrix X)
          Set a submatrix.
 void setMatrix(int[] r, int j0, int j1, Matrix X)
          Set a submatrix.
 void setMatrix(int i0, int i1, int[] c, Matrix X)
          Set a submatrix.
 void setMatrix(int i0, int i1, int j0, int j1, Matrix X)
          Set a submatrix.
 Matrix solve(Matrix B)
          Solve A*X = B
 Matrix solveTranspose(Matrix B)
          Solve X*A = B, which is also A'*X' = B'
 SingularValueDecomposition svd()
          Singular Value Decomposition
 Matrix times(double s)
          Multiply a matrix by a scalar, C = s*A
 Matrix times(Matrix B)
          Linear algebraic matrix multiplication, A * B
 Matrix timesEquals(double s)
          Multiply a matrix by a scalar in place, A = s*A
 double trace()
          Matrix trace.
 Matrix transpose()
          Matrix transpose.
 Matrix uminus()
          Unary minus
 
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Matrix

public Matrix(int m,
              int n)
Construct an m-by-n matrix of zeros.

Parameters:
m - Number of rows.
n - Number of colums.

Matrix

public Matrix(int m,
              int n,
              double s)
Construct an m-by-n constant matrix.

Parameters:
m - Number of rows.
n - Number of colums.
s - Fill the matrix with this scalar value.

Matrix

public Matrix(double[][] A)
Construct a matrix from a 2-D array.

Parameters:
A - Two-dimensional array of doubles.
Throws:
java.lang.IllegalArgumentException - All rows must have the same length
See Also:
constructWithCopy(double[][])

Matrix

public Matrix(double[][] A,
              int m,
              int n)
Construct a matrix quickly without checking arguments.

Parameters:
A - Two-dimensional array of doubles.
m - Number of rows.
n - Number of colums.

Matrix

public Matrix(double[] vals,
              int m)
Construct a matrix from a one-dimensional packed array

Parameters:
vals - One-dimensional array of doubles, packed by columns (ala Fortran).
m - Number of rows.
Throws:
java.lang.IllegalArgumentException - Array length must be a multiple of m.
Method Detail

constructWithCopy

public static Matrix constructWithCopy(double[][] A)
Construct a matrix from a copy of a 2-D array.

Parameters:
A - Two-dimensional array of doubles.
Throws:
java.lang.IllegalArgumentException - All rows must have the same length

copy

public Matrix copy()
Make a deep copy of a matrix


clone

public java.lang.Object clone()
Clone the Matrix object.

Overrides:
clone in class java.lang.Object

getArray

public double[][] getArray()
Access the internal two-dimensional array.

Returns:
Pointer to the two-dimensional array of matrix elements.

getArrayCopy

public double[][] getArrayCopy()
Copy the internal two-dimensional array.

Returns:
Two-dimensional array copy of matrix elements.

getColumnPackedCopy

public double[] getColumnPackedCopy()
Make a one-dimensional column packed copy of the internal array.

Returns:
Matrix elements packed in a one-dimensional array by columns.

getRowPackedCopy

public double[] getRowPackedCopy()
Make a one-dimensional row packed copy of the internal array.

Returns:
Matrix elements packed in a one-dimensional array by rows.

getRowDimension

public int getRowDimension()
Get row dimension.

Returns:
m, the number of rows.

getColumnDimension

public int getColumnDimension()
Get column dimension.

Returns:
n, the number of columns.

get

public double get(int i,
                  int j)
Get a single element.

Parameters:
i - Row index.
j - Column index.
Returns:
A(i,j)
Throws:
java.lang.ArrayIndexOutOfBoundsException

getMatrix

public Matrix getMatrix(int i0,
                        int i1,
                        int j0,
                        int j1)
Get a submatrix.

Parameters:
i0 - Initial row index
i1 - Final row index
j0 - Initial column index
j1 - Final column index
Returns:
A(i0:i1,j0:j1)
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

getMatrix

public Matrix getMatrix(int[] r,
                        int[] c)
Get a submatrix.

Parameters:
r - Array of row indices.
c - Array of column indices.
Returns:
A(r(:),c(:))
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

getMatrix

public Matrix getMatrix(int i0,
                        int i1,
                        int[] c)
Get a submatrix.

Parameters:
i0 - Initial row index
i1 - Final row index
c - Array of column indices.
Returns:
A(i0:i1,c(:))
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

getMatrix

public Matrix getMatrix(int[] r,
                        int j0,
                        int j1)
Get a submatrix.

Parameters:
r - Array of row indices.
i0 - Initial column index
i1 - Final column index
Returns:
A(r(:),j0:j1)
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

set

public void set(int i,
                int j,
                double s)
Set a single element.

Parameters:
i - Row index.
j - Column index.
s - A(i,j).
Throws:
java.lang.ArrayIndexOutOfBoundsException

setMatrix

public void setMatrix(int i0,
                      int i1,
                      int j0,
                      int j1,
                      Matrix X)
Set a submatrix.

Parameters:
i0 - Initial row index
i1 - Final row index
j0 - Initial column index
j1 - Final column index
X - A(i0:i1,j0:j1)
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

setMatrix

public void setMatrix(int[] r,
                      int[] c,
                      Matrix X)
Set a submatrix.

Parameters:
r - Array of row indices.
c - Array of column indices.
X - A(r(:),c(:))
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

setMatrix

public void setMatrix(int[] r,
                      int j0,
                      int j1,
                      Matrix X)
Set a submatrix.

Parameters:
r - Array of row indices.
j0 - Initial column index
j1 - Final column index
X - A(r(:),j0:j1)
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

setMatrix

public void setMatrix(int i0,
                      int i1,
                      int[] c,
                      Matrix X)
Set a submatrix.

Parameters:
i0 - Initial row index
i1 - Final row index
c - Array of column indices.
X - A(i0:i1,c(:))
Throws:
java.lang.ArrayIndexOutOfBoundsException - Submatrix indices

transpose

public Matrix transpose()
Matrix transpose.

Returns:
A'

norm1

public double norm1()
One norm

Returns:
maximum column sum.

norm2

public double norm2()
Two norm

Returns:
maximum singular value.

normInf

public double normInf()
Infinity norm

Returns:
maximum row sum.

normF

public double normF()
Frobenius norm

Returns:
sqrt of sum of squares of all elements.

uminus

public Matrix uminus()
Unary minus

Returns:
-A

plus

public Matrix plus(Matrix B)
C = A + B

Parameters:
B - another matrix
Returns:
A + B

plusEquals

public Matrix plusEquals(Matrix B)
A = A + B

Parameters:
B - another matrix
Returns:
A + B

minus

public Matrix minus(Matrix B)
C = A - B

Parameters:
B - another matrix
Returns:
A - B

minusEquals

public Matrix minusEquals(Matrix B)
A = A - B

Parameters:
B - another matrix
Returns:
A - B

arrayTimes

public Matrix arrayTimes(Matrix B)
Element-by-element multiplication, C = A.*B

Parameters:
B - another matrix
Returns:
A.*B

arrayTimesEquals

public Matrix arrayTimesEquals(Matrix B)
Element-by-element multiplication in place, A = A.*B

Parameters:
B - another matrix
Returns:
A.*B

arrayRightDivide

public Matrix arrayRightDivide(Matrix B)
Element-by-element right division, C = A./B

Parameters:
B - another matrix
Returns:
A./B

arrayRightDivideEquals

public Matrix arrayRightDivideEquals(Matrix B)
Element-by-element right division in place, A = A./B

Parameters:
B - another matrix
Returns:
A./B

arrayLeftDivide

public Matrix arrayLeftDivide(Matrix B)
Element-by-element left division, C = A.\B

Parameters:
B - another matrix
Returns:
A.\B

arrayLeftDivideEquals

public Matrix arrayLeftDivideEquals(Matrix B)
Element-by-element left division in place, A = A.\B

Parameters:
B - another matrix
Returns:
A.\B

times

public Matrix times(double s)
Multiply a matrix by a scalar, C = s*A

Parameters:
s - scalar
Returns:
s*A

timesEquals

public Matrix timesEquals(double s)
Multiply a matrix by a scalar in place, A = s*A

Parameters:
s - scalar
Returns:
replace A by s*A

times

public Matrix times(Matrix B)
Linear algebraic matrix multiplication, A * B

Parameters:
B - another matrix
Returns:
Matrix product, A * B
Throws:
java.lang.IllegalArgumentException - Matrix inner dimensions must agree.

lu

public LUDecomposition lu()
LU Decomposition

Returns:
LUDecomposition
See Also:
LUDecomposition

qr

public QRDecomposition qr()
QR Decomposition

Returns:
QRDecomposition
See Also:
QRDecomposition

chol

public CholeskyDecomposition chol()
Cholesky Decomposition

Returns:
CholeskyDecomposition
See Also:
CholeskyDecomposition

svd

public SingularValueDecomposition svd()
Singular Value Decomposition

Returns:
SingularValueDecomposition
See Also:
SingularValueDecomposition

eig

public EigenvalueDecomposition eig()
Eigenvalue Decomposition

Returns:
EigenvalueDecomposition
See Also:
EigenvalueDecomposition

solve

public Matrix solve(Matrix B)
Solve A*X = B

Parameters:
B - right hand side
Returns:
solution if A is square, least squares solution otherwise

solveTranspose

public Matrix solveTranspose(Matrix B)
Solve X*A = B, which is also A'*X' = B'

Parameters:
B - right hand side
Returns:
solution if A is square, least squares solution otherwise.

inverse

public Matrix inverse()
Matrix inverse or pseudoinverse

Returns:
inverse(A) if A is square, pseudoinverse otherwise.

det

public double det()
Matrix determinant

Returns:
determinant

rank

public int rank()
Matrix rank

Returns:
effective numerical rank, obtained from SVD.

cond

public double cond()
Matrix condition (2 norm)

Returns:
ratio of largest to smallest singular value.

trace

public double trace()
Matrix trace.

Returns:
sum of the diagonal elements.

random

public static Matrix random(int m,
                            int n)
Generate matrix with random elements

Parameters:
m - Number of rows.
n - Number of colums.
Returns:
An m-by-n matrix with uniformly distributed random elements.

identity

public static Matrix identity(int m,
                              int n)
Generate identity matrix

Parameters:
m - Number of rows.
n - Number of colums.
Returns:
An m-by-n matrix with ones on the diagonal and zeros elsewhere.

print

public void print(int w,
                  int d)
Print the matrix to stdout. Line the elements up in columns with a Fortran-like 'Fw.d' style format.

Parameters:
w - Column width.
d - Number of digits after the decimal.

print

public void print(java.io.PrintWriter output,
                  int w,
                  int d)
Print the matrix to the output stream. Line the elements up in columns with a Fortran-like 'Fw.d' style format.

Parameters:
output - Output stream.
w - Column width.
d - Number of digits after the decimal.

print

public void print(java.text.NumberFormat format,
                  int width)
Print the matrix to stdout. Line the elements up in columns. Use the format object, and right justify within columns of width characters. Note that is the matrix is to be read back in, you probably will want to use a NumberFormat that is set to US Locale.

Parameters:
format - A Formatting object for individual elements.
width - Field width for each column.
See Also:
DecimalFormat.setDecimalFormatSymbols(java.text.DecimalFormatSymbols)

print

public void print(java.io.PrintWriter output,
                  java.text.NumberFormat format,
                  int width)
Print the matrix to the output stream. Line the elements up in columns. Use the format object, and right justify within columns of width characters. Note that is the matrix is to be read back in, you probably will want to use a NumberFormat that is set to US Locale.

Parameters:
output - the output stream.
format - A formatting object to format the matrix elements
width - Column width.
See Also:
DecimalFormat.setDecimalFormatSymbols(java.text.DecimalFormatSymbols)

read

public static Matrix read(java.io.BufferedReader input)
                   throws java.io.IOException
Read a matrix from a stream. The format is the same the print method, so printed matrices can be read back in (provided they were printed using US Locale). Elements are separated by whitespace, all the elements for each row appear on a single line, the last row is followed by a blank line.

Parameters:
input - the input stream.
Throws:
java.io.IOException


PK mD4vh44"Jama/doc/Jama/QRDecomposition.html QRDecomposition

Jama
Class QRDecomposition

java.lang.Object
  extended by Jama.QRDecomposition
All Implemented Interfaces:
java.io.Serializable

public class QRDecomposition
extends java.lang.Object
implements java.io.Serializable

QR Decomposition.

For an m-by-n matrix A with m >= n, the QR decomposition is an m-by-n orthogonal matrix Q and an n-by-n upper triangular matrix R so that A = Q*R.

The QR decompostion always exists, even if the matrix does not have full rank, so the constructor will never fail. The primary use of the QR decomposition is in the least squares solution of nonsquare systems of simultaneous linear equations. This will fail if isFullRank() returns false.

See Also:
Serialized Form

Constructor Summary
QRDecomposition(Matrix A)
          QR Decomposition, computed by Householder reflections.
 
Method Summary
 Matrix getH()
          Return the Householder vectors
 Matrix getQ()
          Generate and return the (economy-sized) orthogonal factor
 Matrix getR()
          Return the upper triangular factor
 boolean isFullRank()
          Is the matrix full rank?
 Matrix solve(Matrix B)
          Least squares solution of A*X = B
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

QRDecomposition

public QRDecomposition(Matrix A)
QR Decomposition, computed by Householder reflections.

Parameters:
A - Rectangular matrix
Method Detail

isFullRank

public boolean isFullRank()
Is the matrix full rank?

Returns:
true if R, and hence A, has full rank.

getH

public Matrix getH()
Return the Householder vectors

Returns:
Lower trapezoidal matrix whose columns define the reflections

getR

public Matrix getR()
Return the upper triangular factor

Returns:
R

getQ

public Matrix getQ()
Generate and return the (economy-sized) orthogonal factor

Returns:
Q

solve

public Matrix solve(Matrix B)
Least squares solution of A*X = B

Parameters:
B - A Matrix with as many rows as A and any number of columns.
Returns:
X that minimizes the two norm of Q*R*X-B.
Throws:
java.lang.IllegalArgumentException - Matrix row dimensions must agree.
java.lang.RuntimeException - Matrix is rank deficient.


PK mD4M}C7C7-Jama/doc/Jama/SingularValueDecomposition.html SingularValueDecomposition

Jama
Class SingularValueDecomposition

java.lang.Object
  extended by Jama.SingularValueDecomposition
All Implemented Interfaces:
java.io.Serializable

public class SingularValueDecomposition
extends java.lang.Object
implements java.io.Serializable

Singular Value Decomposition.

For an m-by-n matrix A with m >= n, the singular value decomposition is an m-by-n orthogonal matrix U, an n-by-n diagonal matrix S, and an n-by-n orthogonal matrix V so that A = U*S*V'.

The singular values, sigma[k] = S[k][k], are ordered so that sigma[0] >= sigma[1] >= ... >= sigma[n-1].

The singular value decompostion always exists, so the constructor will never fail. The matrix condition number and the effective numerical rank can be computed from this decomposition.

See Also:
Serialized Form

Constructor Summary
SingularValueDecomposition(Matrix Arg)
          Construct the singular value decomposition
 
Method Summary
 double cond()
          Two norm condition number
 Matrix getS()
          Return the diagonal matrix of singular values
 double[] getSingularValues()
          Return the one-dimensional array of singular values
 Matrix getU()
          Return the left singular vectors
 Matrix getV()
          Return the right singular vectors
 double norm2()
          Two norm
 int rank()
          Effective numerical matrix rank
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SingularValueDecomposition

public SingularValueDecomposition(Matrix Arg)
Construct the singular value decomposition

Parameters:
A - Rectangular matrix
Method Detail

getU

public Matrix getU()
Return the left singular vectors

Returns:
U

getV

public Matrix getV()
Return the right singular vectors

Returns:
V

getSingularValues

public double[] getSingularValues()
Return the one-dimensional array of singular values

Returns:
diagonal of S.

getS

public Matrix getS()
Return the diagonal matrix of singular values

Returns:
S

norm2

public double norm2()
Two norm

Returns:
max(S)

cond

public double cond()
Two norm condition number

Returns:
max(S)/min(S)

rank

public int rank()
Effective numerical matrix rank

Returns:
Number of nonnegligible singular values.


PK mD4XX Jama/doc/Jama/package-frame.html Jama Jama
Classes 
CholeskyDecomposition
EigenvalueDecomposition
LUDecomposition
Matrix
QRDecomposition
SingularValueDecomposition
PK mD47||"Jama/doc/Jama/package-summary.html Jama

Package Jama

Class Summary
CholeskyDecomposition Cholesky Decomposition.
EigenvalueDecomposition Eigenvalues and eigenvectors of a real matrix.
LUDecomposition LU Decomposition.
Matrix Jama = Java Matrix class.
QRDecomposition QR Decomposition.
SingularValueDecomposition Singular Value Decomposition.
 



PK mD4!_nnJama/doc/Jama/package-tree.html Jama Class Hierarchy

Hierarchy For Package Jama

Class Hierarchy



PK mD4M99Jama/doc/resources/inherit.gifGIF89a, DrjԐ;߀Q@N;PK s 5+&Jama/examples/MagicSquareExample.class. Jama/examples/MagicSquareExamplejava/lang/Object()VCode  LineNumberTableLocalVariableTablethis"LJama/examples/MagicSquareExample;magic(I)LJama/Matrix;[[D   Jama/Matrixget(II)D  ([[D)V  nIMabjipkA LJama/Matrix;aijDtprint(Ljava/lang/String;)Vjava/lang/System-outLjava/io/PrintStream; /0 .1java/io/PrintStream3 +, 45sLjava/lang/String;fixedWidthDoubletoString(DII)Ljava/lang/String;java/text/DecimalFormat; <setMaximumFractionDigits(I)V >? <@setMinimumFractionDigits B? <CsetGroupingUsed(Z)V EF <Gformat(D)Ljava/lang/String; IJ <Kjava/lang/StringBufferM O , NQappend,(Ljava/lang/String;)Ljava/lang/StringBuffer; ST NUtoString()Ljava/lang/String; WX NYjava/lang/String[length()I ]^ \_xwdfmtLjava/text/DecimalFormat;fixedWidthIntegertoString(II)Ljava/lang/String;java/lang/Integerh(I)Ljava/lang/String; Wj ikmain([Ljava/lang/String;)V0 Test of Matrix Class, using magic squares. o 56 See MagicSquareExample.main() for an explanation. rM n trace max_eig rank cond lu_res qr_res tjava/util/Datev w@Jjava/lang/Math}pow(DD)D  ~ fg trace()D Jama/EigenvalueDecomposition transpose()LJama/Matrix; plus(LJama/Matrix;)LJama/Matrix; ?times(D)LJama/Matrix; (LJama/Matrix;)V  getRealEigenvalues()[D 9: rank ^ cond  InfJama/LUDecomposition getL getU getPivot()[I  getMatrix([III)LJama/Matrix; minus norm1 Jama/QRDecomposition getQ getR  getTime()J w@@ Elapsed Time =  seconds Adios argv[Ljava/lang/String; start_timeLjava/util/Date;epsELJama/EigenvalueDecomposition;[DrcLULJama/LUDecomposition;LU[IRresQRLJama/QRDecomposition;Q stop_timeetime SourceFileMagicSquareExample.java!/*    c LpO`l=`>666'+2``phh``p``RلʧpP=C>6`lp`lp+2hhddR+2h``R˄,l=dl>:6_6P9+2R+2`hhcR+`2hhcR+`2`hcR6p6*+219+2+`21R+`2Rd`6*+219+2+`21R+`2Rք+219+2+`21R+`2R+219+2+`21R+`2RY+ (!#%')$+E)N'Z7`9e;j={?C;9SUWY[]_ace[Y%k+m1oUm^shusk{} F B!<"!-#bH"g;#%$%&'e"V#?()(v#.0":*)e0"q*)1*) +,62*6  78 9:E()VCode  LineNumberTableLocalVariableTablethisLJama/test/TestMatrix;main([Ljava/lang/String;)V@@@@@@@ @"@$@&@([D&>򚼯H򚼯H@d@g@j@@j@n@p@*@.@@@>@P6 Testing constructors and constructor-like methods... Bprint(Ljava/lang/String;)V DE F Jama/MatrixH([DI)V J IK.Catch invalid length in packed constructor... M&exception not thrown for invalid inputO try_failure((ILjava/lang/String;Ljava/lang/String;)I QR S"java/lang/IllegalArgumentExceptionU getMessage()Ljava/lang/String; WX VY try_success'(Ljava/lang/String;Ljava/lang/String;)V [\ ]([[D)V _ I`get(II)D bc Id-Catch ragged input to default constructor... f%Catch ragged input to constructor... hRexception not thrown in construction...ArrayIndexOutOfBoundsException thrown laterjconstructWithCopy([[D)LJama/Matrix; lm In+Catch ragged input to constructWithCopy... pminus(LJama/Matrix;)LJama/Matrix; rs ItconstructWithCopy... v)copy not effected... data visible outsidexzidentity(II)LJama/Matrix; |} I~check(LJama/Matrix;LJama/Matrix;)V  identity... (identity Matrix not successfully created Testing access methods... getRowDimension()I IgetRowDimension... getColumnDimension IgetColumnDimension... getArray()[[D I getArray...  getArrayCopy IgetArrayCopy... data not (deep) copied ([[D[[D)V #data not successfully (deep) copiedgetColumnPackedCopy()[D I([D[D)V getColumnPackedCopy... .data not successfully (deep) copied by columnsgetRowPackedCopy IgetRowPackedCopy... +data not successfully (deep) copied by rowsget(int,int)... ,OutOfBoundsException expected but not thrown(get(int,int)... OutofBoundsException... -Matrix entry (i,j) not successfully retreived)Unexpected ArrayIndexOutOfBoundsException getMatrix(IIII)LJama/Matrix; IgetMatrix(int,int,int,int)... 6ArrayIndexOutOfBoundsException expected but not thrown@getMatrix(int,int,int,int)... ArrayIndexOutOfBoundsException... $submatrix not successfully retreived(II[I)LJama/Matrix; IgetMatrix(int,int,int[])... >getMatrix(int,int,int[])... ArrayIndexOutOfBoundsException... ([III)LJama/Matrix; IgetMatrix(int[],int,int)... >getMatrix(int[],int,int)... ArrayIndexOutOfBoundsException... ([I[I)LJama/Matrix; IgetMatrix(int[],int[])... getU @$ ?AgetS C$ ?DgetV F$ ?GSingularValueDecomposition...I2incorrect singular value decomposition calculationKrank M INmin(II)I PQ R rank()...Tincorrect rank calculationVgetSingularValues X ?Ycond [ I\ cond()...^&incorrect condition number calculation`lu()LJama/LUDecomposition; bc IdJama/LUDecompositionfgetPivot()[I hi gjgetL l$ gm gALUDecomposition...p&incorrect LU decomposition calculationrinverse t$ Iu inverse()...wincorrect inverse calculationysolve {s I| solve()...~java/lang/RuntimeException Ychol()LJama/CholeskyDecomposition;  IJama/CholeskyDecomposition mCholeskyDecomposition...,incorrect Cholesky decomposition calculation | CholeskyDecomposition solve()...1incorrect Choleskydecomposition solve calculationeig ()LJama/EigenvalueDecomposition;  IJama/EigenvalueDecompositiongetD $  G&EigenvalueDecomposition (symmetric)...8incorrect symmetric Eigenvalue decomposition calculation)EigenvalueDecomposition (nonsymmetric)...;incorrect nonsymmetric Eigenvalue decomposition calculation TestMatrix completed. java/lang/StringBufferTotal errors reported:  java/lang/IntegertoString(I)Ljava/lang/String;  append,(Ljava/lang/String;)Ljava/lang/StringBuffer;    X Total warnings reported: (java/lang/ArrayIndexOutOfBoundsExceptionjava/io/IOExceptionargv[Ljava/lang/String;A LJama/Matrix;BCZOIRSXSUBMTSQDEFSOL errorCount warningCounttmpD columnwiserowwiseavals[[Drankdeftvalssubavalsrvalspvalsivalsevalssquare sqSolutioncondmatrowscols invalidldraggedrraggedcvalidld nonconformldibiejbje rowindexset[Ibadrowindexsetcolumnindexsetbadcolumnindexset columnsummax rowsummaxsumofdiagonals sumofsquarese$Ljava/lang/IllegalArgumentException;*Ljava/lang/ArrayIndexOutOfBoundsException;Ljava/lang/RuntimeException;barraybpackede1fmtLjava/text/DecimalFormat;FILELjava/io/PrintWriter;ioeLjava/io/IOException;Ljava/lang/Exception;tmpnameLjava/lang/String;Ljava/io/ObjectOutputStream;sinLjava/io/ObjectInputStream;QRLJama/QRDecomposition;SVD!LJama/SingularValueDecomposition;singularvaluesnLULJama/LUDecomposition;CholLJama/CholeskyDecomposition;LEigLJama/EigenvalueDecomposition;VJpow(DD)D  abs   max " #%The difference x-y is too large: x = %java/lang/Double'(D)Ljava/lang/String; ) (* y = , xyeps/Attempt to compare vectors of different lengths2i@@ The norm of (X-Y) is too large: 7Yjava/io/PrintStream: ;Fs> >success @> Message: B *** failure *** > Message: Dcount *** warning *** > Message: G([DII)V D* IJwd SourceFileTestMatrix.java! /*    )8H066 YRYRYRYRYRYRYRYRYRY  RY "RY $R: YRYRYRY RYRYRYRY"RYRY RY RY $R:'YYRYRYRY RSYYRYRYRY"RSYYRYRYRY$RS::'YYRYRYRSYYRYRYRSYYRYRYRSYY RY"RY$RS:'YYRYRY"RSYYRYRY$RS:'YYRYRYRSYYRYRYRY"RSYYRYRYRY$RS:'YYRYRYRSYYRYRYRSYYRYRYRS:'YYRYRYRYRSYYRYRYRYRSYYRYRYRYRS:'YYRYRYRYRSYYRYRY(RYRSYYRY*RYRYRSYYRYRYRYRS:'YY,RY.RY0RSYY.RY2RY4RSYY0RY4RY6RS: 'YY8RSYY:RS:!'YYRYRSYYRYRS:"6#6$6%6&6'6(6)6*6+6,6- YOYO:. 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